BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0025.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309681|ref|YP_003773773.1| cell division septal protein [H...   399   e-112

>gi|300309681|ref|YP_003773773.1| cell division septal protein
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  399 bits (1025), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/257 (79%), Positives = 233/257 (90%), Gaps = 1/257 (0%)

Query: 1   MWQDVKMLNATTNALLALVALALLASGLWWLAQRPMFTLRTIRVEGVAEEQLRRVNPLTI 60
           MWQDVKMLNA ++ALLALV LAL+ASGLWW+AQRPMFTL TIR+E   E  L +VN LT+
Sbjct: 1   MWQDVKMLNAISSALLALVLLALVASGLWWVAQRPMFTLHTIRIESAGELPLEKVNALTV 60

Query: 61  RASAVPRIKGNFFTADLDAVRAAFESVPWVRKAMVRREWPNKLIVTLEEHRALGTWGDDG 120
           RA+AVPRI GNFFTADL AVRAAFE+VPWVRKAMVRREWP++L+V +EEH+ALGTWG+DG
Sbjct: 61  RATAVPRIHGNFFTADLTAVRAAFEAVPWVRKAMVRREWPDRLVVKIEEHKALGTWGEDG 120

Query: 121 RLLSVKGDVFTANLAEAEDDGDLLEFDGPVGSEKEVVARFDQFRDWFAPIKLEPESVALS 180
           +LLS KGDVFTANLAEAEDD DLLEFDGP GSEK+VVAR  QFR WFAPIKLEPES+ LS
Sbjct: 121 KLLSQKGDVFTANLAEAEDDTDLLEFDGPPGSEKQVVARLAQFRQWFAPIKLEPESLVLS 180

Query: 181 NRYAWTVKLDNGLTVELGRAESDATLKERIARLVSVYPQLVDRLQGKKIENVDMRYPNGL 240
           NRYAWTV+LDNG+TVELGR + DA LKER+ARLV+VYPQL+DRLQG KIE+VD+RYPNG+
Sbjct: 181 NRYAWTVRLDNGMTVELGRDQGDAVLKERVARLVAVYPQLLDRLQG-KIESVDLRYPNGM 239

Query: 241 ALKADGLVLAALNGKKK 257
           ALKADG+VLAA+NGKKK
Sbjct: 240 ALKADGMVLAAMNGKKK 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 706,169
Number of extensions: 27983
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)