BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0023.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309683|ref|YP_003773775.1| cell division GTPase [Herbaspir...   392   e-110

>gi|300309683|ref|YP_003773775.1| cell division GTPase
           [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score =  392 bits (1008), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/255 (86%), Positives = 224/255 (87%), Gaps = 23/255 (9%)

Query: 1   MLDNATLGTIIKVVGVGGAGGNAVQHMINKGVSGVEFIAANTDAQALKMSKADNVIQIGE 60
           M+DNATLGTIIKVVGVGGAGGNAVQHMINKGVSGVEFIAANTDAQALK SKA NVIQIG+
Sbjct: 5   MVDNATLGTIIKVVGVGGAGGNAVQHMINKGVSGVEFIAANTDAQALKQSKAHNVIQIGD 64

Query: 61  TGLGAGMQPQVGRRLAEETRSX------GA-----------------APVVAEVAKSLGA 97
           TGLGAGMQP VGRRLAEETR+       GA                 APVVA+VAKSLGA
Sbjct: 65  TGLGAGMQPDVGRRLAEETRARIEDSLRGAHMVFIAAGMGGGTGTGAAPVVAQVAKSLGA 124

Query: 98  LTVAVVSKPFSYEGQKCMDIADQGLEELGQHVDSLIIILNEKLEEIYEDDSMIEWLGHAD 157
           LTVAVVSKPFSYEGQKCMDIAD GLEEL QHVDSLIIILNEKLEEIYEDDSMIEWL HAD
Sbjct: 125 LTVAVVSKPFSYEGQKCMDIADAGLEELSQHVDSLIIILNEKLEEIYEDDSMIEWLSHAD 184

Query: 158 DVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRARVAAEQAVAS 217
           DVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRARVAAEQAVAS
Sbjct: 185 DVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRARVAAEQAVAS 244

Query: 218 PLLDGIDLSGARGAL 232
           PLLDGIDLSGARG L
Sbjct: 245 PLLDGIDLSGARGVL 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 672,236
Number of extensions: 25032
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)