BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0022.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309683|ref|YP_003773775.1| cell division GTPase [Herbaspir...   509   e-146

>gi|300309683|ref|YP_003773775.1| cell division GTPase
           [Herbaspirillum seropedicae SmR1]
          Length = 395

 Score =  509 bits (1312), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/283 (90%), Positives = 265/283 (93%), Gaps = 3/283 (1%)

Query: 1   VAEVAKSLGALTVAVVSKPFSYEGQKCMDIADQGLEELGQHVDSLIIILNEKLEEIYEDD 60
           VA+VAKSLGALTVAVVSKPFSYEGQKCMDIAD GLEEL QHVDSLIIILNEKLEEIYEDD
Sbjct: 115 VAQVAKSLGALTVAVVSKPFSYEGQKCMDIADAGLEELSQHVDSLIIILNEKLEEIYEDD 174

Query: 61  SMIEWLGHADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRA 120
           SMIEWL HADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRA
Sbjct: 175 SMIEWLSHADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATASGVDRA 234

Query: 121 RVAAEQAVASPLLDGIDRARAR-VLVNVTASRNLKGKEIKEVMATVRAFAAPDASIAQGI 179
           RVAAEQAVASPLLDGID + AR VLVNVTASR+LKGKEIKEVMATVRAFAAPDASIAQGI
Sbjct: 235 RVAAEQAVASPLLDGIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGI 294

Query: 180 AYDDGMGDDIRVTVVATGLGRNRKSVQLVQTPMLRTGTHNEPMMAGTGTMNNANGGAQTG 239
           AYDD MGD+IRVTVVATGLGR RK+VQLVQTP++RTGTHNEP+MA  G M    GGAQ  
Sbjct: 295 AYDDSMGDEIRVTVVATGLGRARKAVQLVQTPVMRTGTHNEPIMAVGGAM--PQGGAQAA 352

Query: 240 AAFGGMKAPAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD 282
            AFGG+KAPAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD
Sbjct: 353 PAFGGLKAPAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 715,311
Number of extensions: 24269
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)