BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0016.p
         (923 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309688|ref|YP_003773780.1| preprotein translocase SecA sub...  1671   0.0  

>gi|300309688|ref|YP_003773780.1| preprotein translocase SecA
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 918

 Score = 1671 bits (4328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/923 (86%), Positives = 855/923 (92%), Gaps = 5/923 (0%)

Query: 1   MSLLTQIFGSRNQRLLKQYQKIVRQINALEADIEKLSDAELQAKTPEFKQRVADGTKLDD 60
           MS LT+IFGSRNQRLLKQYQKIVRQINALE  +EKL+DAELQAKTPEFKQR+A G  LD 
Sbjct: 1   MSFLTKIFGSRNQRLLKQYQKIVRQINALEPTVEKLTDAELQAKTPEFKQRIAGGETLDA 60

Query: 61  ILPEAFAVCREASKRVLKMRHFDVQLVGGMVLHFGKIAEMRTGEGKTLMATLPAYLNALS 120
           ILPEAFAVCREAS+RVLKMRHFDVQL+GGM LHFGKIAEMRTGEGKTLMATLPAYLNAL+
Sbjct: 61  ILPEAFAVCREASRRVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALA 120

Query: 121 GKGVHVVTVNDYLAQRDAEWMGKLYGWLGLSTGVNLSQMEHDLKQGAYASDITYGTNNEF 180
           GKGVHVVTVNDYLAQRDAE MG+LY WLGL+TGVNLSQMEHD+KQ AYA+DITYGTNNEF
Sbjct: 121 GKGVHVVTVNDYLAQRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEF 180

Query: 181 GFDYLRDNMVFDATDRVQRGLNFAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINGV 240
           GFDYLRDNMVFDA DRVQR LNFAIVDEVDSILIDEARTPLIISGQAENHT+LYHK+N V
Sbjct: 181 GFDYLRDNMVFDADDRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHKMNAV 240

Query: 241 PPLLTLQIGEETPDGKGKVEVPGDYTKDEKGHQVLLTEAGHERAEQILTSMGLLPEGASL 300
           PPLLT QIGEETPDGKGKVEVPGDYTKDEK HQVLLTEAGH++AE+ILT MGLLPEGASL
Sbjct: 241 PPLLTQQIGEETPDGKGKVEVPGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLPEGASL 300

Query: 301 YDASNISLVHHLYAALRAHTLYHKDQQYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE 360
           YDA+NI+L+HHLYAALRAHTLYH+DQ YVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE
Sbjct: 301 YDAANITLIHHLYAALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE 360

Query: 361 AKEGVKIQNENQTLASITFQNYFRMYGKLSGMTGTADTEAYEFQEIYNLETVVIPPNRPS 420
           AKEGVKIQNENQTLASITFQNYFRMY KLSGMTGTADTEAYEFQEIY+LETVVIPPNRP+
Sbjct: 361 AKEGVKIQNENQTLASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIPPNRPN 420

Query: 421 ARKDRQDQVYKTSQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILNQSKLPHNV 480
           ARKDRQDQVYKT+QEKYMAM+KDIQDCYERGQPVLVGTTSIENSELLSGIL ++KLPHNV
Sbjct: 421 ARKDRQDQVYKTAQEKYMAMLKDIQDCYERGQPVLVGTTSIENSELLSGILTKAKLPHNV 480

Query: 481 LNAKQHAREAEIIAQAGRPKMITIATNMAGRGTDIVLGGNVENQIKIIDADASLSDADKA 540
           LNAKQHAREAEI+AQAGRPKMITIATNMAGRGTDIVLGGNV  QI++I+AD SLSDADKA
Sbjct: 481 LNAKQHAREAEIVAQAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEADESLSDADKA 540

Query: 541 AQAQKLRDEWQSLHDHVVSAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600
           A+AQ+LRDEWQSLHDHVV+AGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD
Sbjct: 541 AKAQQLRDEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600

Query: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDV 660
           DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIV+RSIESAQRKVEARNFDIRKQLLEYDDV
Sbjct: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDV 660

Query: 661 ANDQRKVIYQQRNELLEAAEMEEMITSLREGVFTEAFRTHVPEESVEEQWDIPALEAALS 720
           ANDQRKVIYQQRNELLE+AEM EMI SLR+GVFT+ FR +VP ES+EEQWDIP L+A L 
Sbjct: 661 ANDQRKVIYQQRNELLESAEMAEMIASLRDGVFTDLFREYVPAESMEEQWDIPGLQAVLK 720

Query: 721 NEWQLAVPLTAILEAEPNLTDEELLERVLSAAATTYKAKVDVVGAEAFSGFERSVMLQSI 780
           NEWQL V L A L+AEP++ D+ELL  +L AA   Y AKV VVG EAF+GFERSVMLQSI
Sbjct: 721 NEWQLDVYLDATLKAEPDMADDELLAHLLKAAKDAYDAKVAVVGVEAFAGFERSVMLQSI 780

Query: 781 DSHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKIVMTVRI 840
           D+HWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIK+VMTVRI
Sbjct: 781 DNHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVVMTVRI 840

Query: 841 ESREAIEEAEENLAQSHVENVHYQHADFDANAAPEELLAPTANAASDDQSQQPMVNGLPK 900
           +SRE IE AEE++A     NV+YQHADFD  AAPEELLAPT  A S D   +       K
Sbjct: 841 QSREEIEAAEESMAGGSPINVNYQHADFDPEAAPEELLAPTVQAGSGDDGSE-----YAK 895

Query: 901 VGRNDPCPCGSGKKYKQCHGKLA 923
           VGRNDPCPCGSGKKYKQCHGKLA
Sbjct: 896 VGRNDPCPCGSGKKYKQCHGKLA 918


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,692,633
Number of extensions: 111296
Number of successful extensions: 367
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 1
Length of query: 923
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 829
Effective length of database: 1,174,780
Effective search space: 973892620
Effective search space used: 973892620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)