BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0014.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309689|ref|YP_003773781.1| transmembrane protein [Herbaspi...   291   4e-80

>gi|300309689|ref|YP_003773781.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  291 bits (744), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 136/218 (62%), Positives = 164/218 (75%)

Query: 26  MSTPAASALALRQDAPPRAALLAAAETEWTFFDRQQIDMRGEVLSAPRLGLLEDEGEAVQ 85
           ++  A  A+A+    P RAAL+ AA+ EW FF  QQIDMR E  SAPRLGLLEDEGEAVQ
Sbjct: 58  VTNTAVPAVAISTAPPTRAALVDAAKAEWDFFGNQQIDMRHEPFSAPRLGLLEDEGEAVQ 117

Query: 86  RIGTYWQSVGKSFTGADTQQAWSAAFISYLMQAAGISSDDFLASDVHFNYLTYLKARQSL 145
           R+  YW +VGK+ TGAD QQAWSAAFIS+LM    +   DF  ++ HFNYL++LK R+S 
Sbjct: 118 RVAEYWHAVGKNLTGADCQQAWSAAFISWLMVTTNVPPQDFAPNETHFNYLSFLKDRESR 177

Query: 146 PAPLFVLRPAATEPIAPGDLICAPRDSNQAATLDDIRPGLPGHCDLVYEIHPGRGWAGVI 205
           P+P F+LRPA +EPIA GDLICAPR +N   ++D+IRPGL GHCD+V E+H   GWAGVI
Sbjct: 178 PSPQFLLRPADSEPIAAGDLICAPRGNNNITSIDEIRPGLAGHCDVVVEVHADDGWAGVI 237

Query: 206 GGNVFNSVSESLIPIDANARLLPLARRPWFVVAKNLMP 243
           GGNVFNSVSESLIP+D   R  P+A RPW VV KNL+P
Sbjct: 238 GGNVFNSVSESLIPVDGQGRAQPIAARPWLVVVKNLLP 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,749
Number of extensions: 30254
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)