BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0012.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309692|ref|YP_003773784.1| AAA+ superfamily ATPase [Herbas...   521   e-149

>gi|300309692|ref|YP_003773784.1| AAA+ superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 291

 Score =  521 bits (1341), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/289 (87%), Positives = 267/289 (92%), Gaps = 2/289 (0%)

Query: 1   MTQLDQFLQRAEALLARIESILPQSAT-SVEWDKGVAFRWRRRNGANSGGYLQPVGHISH 59
           MTQLDQFLQRAEALLAR+E+ILPQ+A    +W+  VAFRWR    A   GYLQ VGHIS 
Sbjct: 1   MTQLDQFLQRAEALLARVEAILPQAAAREPDWNAAVAFRWRGAT-AQRPGYLQAVGHISQ 59

Query: 60  IALSDLHNIGPQKEQIDQNTKQFVDGRPANNVLLTGARGTGKSSLIKACLNQYADRGLRL 119
           I LSDLHNIGPQKEQIDQNT+QFV+GRPANNVLLTGARGTGKSSLIKACLNQYADRGLRL
Sbjct: 60  IGLSDLHNIGPQKEQIDQNTRQFVEGRPANNVLLTGARGTGKSSLIKACLNQYADRGLRL 119

Query: 120 IEVDKDDLHDLPDIVDLVSARPERFIIFCDDLSFEEGESGYKALKVALDGSIAAQSDNVL 179
           IEVDKDDLHDL DIV+LV+ARPERFI+FCDDLSFEEGE GYKALKVALDGSIAAQSDNVL
Sbjct: 120 IEVDKDDLHDLQDIVELVAARPERFIVFCDDLSFEEGEGGYKALKVALDGSIAAQSDNVL 179

Query: 180 IYATSNRRHLMPERMSDNSTYTHTDDGDLHPGETVEEKISLSERFGLWVTFYPFKQDDYL 239
           IYATSNRRHLMPER+SDNSTYTHT+DGDLHPGETVEEKISLSERFGLWVTFYPFKQDD+L
Sbjct: 180 IYATSNRRHLMPERLSDNSTYTHTEDGDLHPGETVEEKISLSERFGLWVTFYPFKQDDFL 239

Query: 240 EIVAHWLRHFGCDAAQIESARGDALRWALQRSSRSGRVAWQFSRDYAGK 288
           EIVAHWLRHFGC+ AQI  AR DALRWALQRSSRSGRVAWQF+RDYAGK
Sbjct: 240 EIVAHWLRHFGCNDAQIAEARADALRWALQRSSRSGRVAWQFARDYAGK 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 961,341
Number of extensions: 40633
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)