BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0006.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309698|ref|YP_003773790.1| type II secretion system protei...   109   1e-25

>gi|300309698|ref|YP_003773790.1| type II secretion system protein
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  109 bits (273), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 70/87 (80%)

Query: 69  GASLAAAIEGTRLFPELVGQMVAIGEESGALDQMLAKVADFYEIEVDEAVATISTLMEPF 128
           GASL AA++ T +FP+L  QM A+GEE+G LD ML K+A+  E EVD+ V  +++LMEP 
Sbjct: 329 GASLHAAMQATGVFPDLAVQMTAVGEETGTLDAMLIKIAELNEREVDDTVTALTSLMEPA 388

Query: 129 IMLVLGVVIGGLVIAMYLPIFKLGSVI 155
           IM VLG+VIGGLVIA+YLP+F++GSV+
Sbjct: 389 IMTVLGLVIGGLVIALYLPVFRMGSVV 415



 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 34/42 (80%), Gaps = 1/42 (2%)

Query: 7   IMIWVVPSFKEVFGSFGAALPLPTLIVIAISDFLTKYW-WMM 47
           IM+WVVP+F+++F  FGA LPLPT IV++++  LT+ W W++
Sbjct: 198 IMLWVVPAFEQMFRHFGAELPLPTRIVMSLAHALTQAWPWLL 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 404,309
Number of extensions: 14778
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)