BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0001.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange tra...   326   1e-90

>gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score =  326 bits (835), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 157/219 (71%), Positives = 181/219 (82%), Gaps = 4/219 (1%)

Query: 10  RAGGWMESVKRFFGVLMLATALWMVSPVIPAWAFVAGWAALGIAYGAYLLWSKPGHWAAR 69
           RAG WM++VKRFFGVLML TALWM+SPVIPAW  VAGWAALG+ YGA+LLW++P  W AR
Sbjct: 382 RAGAWMDAVKRFFGVLMLGTALWMISPVIPAWLQVAGWAALGVGYGAFLLWTRPAGWIAR 441

Query: 70  ACGLAFAALGVLQLVSVATGGRDPLAPLSHLGGGKPAAH-TDFVRVRSVAELDAALAQTG 128
           A GL    LG+LQLVS ATGGRDPLAPLSHL G   AAH TDFVR+RS AELDAAL Q  
Sbjct: 442 AFGLVVVTLGLLQLVSAATGGRDPLAPLSHLRGQSAAAHATDFVRIRSSAELDAALQQNA 501

Query: 129 G---KPALLDFYADWCVSCKEMEKFTFTDPRVREKFARMVLLQIDVTANNADDKAMLKRF 185
               +P +LDFYADWCVSCKEME+FTFTD RV+ +F +M+LLQIDVTANNADD+AMLKRF
Sbjct: 502 AGERRPVMLDFYADWCVSCKEMERFTFTDERVKARFGQMLLLQIDVTANNADDRAMLKRF 561

Query: 186 QLFGPPGIILFDGQGRELAGKRVIGYQNAEQFLQSLQVL 224
            LFGPPGI+ FD  GRELA +RVIGYQ+A++F+ +LQ L
Sbjct: 562 NLFGPPGIMFFDADGRELASRRVIGYQDADRFISALQNL 600


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 670,727
Number of extensions: 25662
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)