BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0460.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746...   353   1e-98

>gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  353 bits (907), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/386 (50%), Positives = 251/386 (65%), Gaps = 15/386 (3%)

Query: 8   CQRAPQV---LPQQAYIWQRQWSPAVGAAMQASDQLVGGWRVLAAEFTAQRQWKIVNPDW 64
           C RAP     LPQ AYIWQRQW+PA+  A+ AS   V  W VLAAE  A  +W  ++PD 
Sbjct: 52  CSRAPAPGARLPQDAYIWQRQWTPALRTALSASHAHVARWHVLAAELGASGRWIDIDPDV 111

Query: 65  QALKSTQHAIVMVVRLDGQTGSLDTAT-HARVNDLLARWRQQGVPIAGVEIDYDCPTSQL 123
           +AL +T   ++M VR++GQ   LD A     + + L+ WR++G+  A +EIDYDC T++L
Sbjct: 112 EALANTGRPLLMTVRINGQLARLDAAAIQDHLLERLSAWRRRGLQPAALEIDYDCATARL 171

Query: 124 PAYRNFLAGMRQSLDRDTTLSITALPTWLNSPELSKLLAITDESVLQVHAVMNPRQGLFD 183
           P Y  FL  ++  +     L++TALPTWL+SP+L+ LLA+ DES LQVHAV++PR GLFD
Sbjct: 172 PEYIAFLRSLKARVA-PLDLAVTALPTWLSSPQLASLLAVADESTLQVHAVLDPRLGLFD 230

Query: 184 AERAQAWLKAYAKQSAHPWRIALPSYGTRVSWDDNGLISAVESERPLLASGNAAQELTAS 243
           A  AQ WL  YA+++  PW +ALP+YG RVSWD  G I+AVESERPLLA G    EL   
Sbjct: 231 ARLAQDWLHQYAQRTRRPWHVALPAYGARVSWDAQGRIAAVESERPLLA-GGLGNELMVD 289

Query: 244 PAVVSAFLAQLDKNPAPGLIGVVWFRLPTEDDVRNWSLPTWQAVLARQPLVSVVSAVTVE 303
           P V++ F+AQL  +P  G+ G+ WFRLPT DD R WSL TW AVL  +PL   +    V 
Sbjct: 290 PQVMARFVAQLQASPPAGMAGITWFRLPTGDDRRAWSLSTWIAVLEGKPLKPGLQVQLVA 349

Query: 304 ARGNAQAGLHDLMLRNNGNADSALPLIVRI-----DAASACD--AADGINGYALEADAQG 356
            +G       D+ L N GNAD +LPL VRI     DAASA +  + DGINGY LE DAQG
Sbjct: 350 GQGGNTP--SDIRLNNEGNADVSLPLRVRIKVRAGDAASAGNVCSGDGINGYTLENDAQG 407

Query: 357 KYLRRTRDGLLRAGYQRNIGWVHCGQ 382
           +YLR  + GLLRAG  R IGW+ C +
Sbjct: 408 RYLRLGQAGLLRAGASRTIGWLRCAE 433


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,344,049
Number of extensions: 57746
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)