BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0457.p
         (60 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece...   100   3e-23
gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore rece...    62   7e-12

>gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 705

 Score =  100 bits (248), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 53/60 (88%)

Query: 1   MLPAYVTAKALAYWQFTPSMRLSLDVANLFNKHYYASSYSNVWIAPGDARSAMLGLNIRF 60
           MLP+YVTA+ALAYWQFTP M+LSLDV NLFNK YY+SSY+++WI PGD R+A L LNI+F
Sbjct: 646 MLPSYVTARALAYWQFTPKMKLSLDVNNLFNKRYYSSSYNSLWIMPGDERNATLALNIKF 705


>gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 715

 Score = 62.4 bits (150), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 2   LPAYVTAKALAYWQFTPSMRLSLDVANLFNKHYYASSYSNVWIAPGDARSAMLGLNI 58
           LPAY   K L+YWQ + ++RLSLDV NLFN++YY  S++N+++ PG  R+ +  + I
Sbjct: 657 LPAYTLVKLLSYWQVSKNVRLSLDVHNLFNRNYYPGSWNNLYVMPGAERTVVARMKI 713


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 181,515
Number of extensions: 4698
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 1,619,870
Length adjustment: 33
Effective length of query: 27
Effective length of database: 1,463,615
Effective search space: 39517605
Effective search space used: 39517605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)