BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0451.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311746|ref|YP_003775838.1| iron-regulated membrane protein...    59   7e-10

>gi|300311746|ref|YP_003775838.1| iron-regulated membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 435

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 31/213 (14%)

Query: 12  VHKWTSLVSTVFLLLLCLTGLPLIFGDEIDAVFDPEVAISAVAAG-TPDASLDRII---A 67
           +H+WT L    FL++  LTG  L+F DE+DA   P++ ++  A G +  A +D  +    
Sbjct: 25  LHRWTGLGMAFFLIVTSLTGSLLVFDDELDAWLAPQLQLAQPAPGQSAQAMMDPYLLREK 84

Query: 68  AAHARYPGQHLRFMVWDKEEPRRLSLNMAASADATAAQGHVLIYD-------------TR 114
            A A  P  H+  +V      R +S     + D    + + L YD              R
Sbjct: 85  VAQAMGPQVHISQLVLHARPGRTVSFQADPATDPATGKPYRLGYDEILVNPYTGVVQGVR 144

Query: 115 TATLLSETPALHGFMHVMLQLHQNLFIGLA-GDLLLGVAGLLFLAALVSGVVLYGPYMRK 173
               +S  PA    M  + +LH +L +  A G LLLG  GLL+      G++L  P  R 
Sbjct: 145 DRDKISLKPA--DLMPFLFKLHHSLALPRAPGALLLGTVGLLWTLDCFVGMILTWPRARP 202

Query: 174 LDFGAVRFARGRRLRW--------LDLHNLIGV 198
                V++     ++W        LDLH   G+
Sbjct: 203 F---LVKWKPAWLIKWRAGFYRVNLDLHRAFGL 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,049,624
Number of extensions: 36027
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)