BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0447.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DM...    94   8e-21

>gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score = 93.6 bits (231), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 2/112 (1%)

Query: 33  LPLLAVCIWSGNTIVTKAASTAIEPAAIAFYRWVLAVLVMTPFLGRAAWRQRAAIAADWN 92
            PL AV IW+GNT+++K +++ I P  I+FYRWVLA L+M+PFL R  W  RA I    +
Sbjct: 8   FPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARAQIRP--H 65

Query: 93  WARLLLLGALGMAMYQGLAYEAAHSTSAVNMGVTVALMPLISACLSSMLSGE 144
             ++++L  LGM ++Q LAY AA + SA +MG+  +LMPL++  LS  L  E
Sbjct: 66  LGKIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSE 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 277,674
Number of extensions: 6093
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)