BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0441.p
         (715 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit ...   108   2e-24

>gi|300312560|ref|YP_003776652.1| xanthine dehydrogenase subunit B
           [Herbaspirillum seropedicae SmR1]
          Length = 789

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 178/732 (24%), Positives = 291/732 (39%), Gaps = 103/732 (14%)

Query: 10  PSLQTGVGAALPRIDGPLKVTGRARYTSDRRYPDM---LIAVPVCATIAHGDIRAIATAT 66
           P     VG   P     L VTG A YT D   P++   L A    +  AH  +RAI    
Sbjct: 16  PHDWAAVGKPHPHESARLHVTGEAVYTDD--IPELRGTLHAALGLSQKAHARVRAIDLEK 73

Query: 67  AARMPGVRMIYTHENIGRFFRINPSSGVKTDEKRPPLEDATVRYYGQYVALVLADTFEQA 126
               PGV+ ++T  +I      N    +  D+  P L D  V+Y GQ + +V+AD+ E A
Sbjct: 74  VKAAPGVKAVFTAADIPG---DNECGAILHDD--PVLADGLVQYVGQPLFIVVADSHELA 128

Query: 127 TAAAAAVRVDYR--------KEAHDVRKELAAEGKPKVDSERGSPDAAFANAAVRIDQTY 178
             AA    +DY         ++AH  +  +     P +   RG P  A A A  R+   +
Sbjct: 129 RRAARLAVIDYEELPAILTPRQAHAAQSYVL----PPMHLSRGEPAIALALAPHRLRGQF 184

Query: 179 TTPVETHNPIELHASVALYDSLAQSFTLYETSQAIVNHRGVMSQMLGVPPENMRIITEYL 238
               +    +E   S A+     +   +Y ++Q     +  ++ +LG+   ++ +    +
Sbjct: 185 DVGGQEQFYLEGQISYAIPKE-GRGMHVYCSTQHPSEMQHHVATVLGLASHDVLVECRRM 243

Query: 239 GSGFGGKLWPWGHSLLAAQAGWGXHNVGHRANTQQR-VRLSA------TAGGKLTSLQQD 291
           G GFGGK          +Q+          A   QR V+L A         GK      D
Sbjct: 244 GGGFGGK---------ESQSALWACAAAVAAARLQRPVKLRADRDDDMMVTGKRHCFAYD 294

Query: 292 YLFQVAQ----VDASVEH-------------------CGEATAYLYGTDNLRVTGAPVKR 328
           Y          V A +E                    C    AY     ++R      K 
Sbjct: 295 YEIGYDDHGRIVAAKIEMISRAGFSADLSGPVATRAVCHFDNAYYLSDVDIRAMCG--KT 352

Query: 329 HIAPNTSMRGPGAVPGLFATESAMDELAIALNIDPVQLRLLN-----EPAADQSINAPFS 383
           +   NT+ RG G   G  A E  +D++A  L  DP+++R  N     +    Q+ N    
Sbjct: 353 NTQSNTAFRGFGGPQGALAIEYIIDDIARHLGRDPLEIRRNNFYGPSDEEGPQARNVTHY 412

Query: 384 SRHLRE----ALQTGAERFG-WERRNPAVGSMQQDGEILGWGMA------ACSWMAKRVG 432
            + + +    AL    ER   ++ R  AV +      +L  G+A        S+    + 
Sbjct: 413 GQKVEDNIIPALVDQLERSSRYQERRQAVAAFNAGSTVLKKGLALTPVKFGISFNVPHLN 472

Query: 433 -AEASVTLGSDGNARVSSAVQDLGTGTYTVVSQMVAETTGIPMSNIIVAIGDTKLPPGPM 491
            A A V + +DG+  V+    ++G G  T V+Q+VA T G+P+  +  +  DT       
Sbjct: 473 QAGALVHVYTDGSVLVNHGGTEMGQGLNTKVAQVVAHTLGVPLERVRCSATDTS-----K 527

Query: 492 SGGSMATASMVPAVLQ---AARAAMQQAVAVAAEHPSSPLRGTRAEELSFSGGRIHRRSQ 548
              + ATA+   + L    A  AA+Q    +A    ++ L G     + F+ GR+   +Q
Sbjct: 528 VANTSATAASTGSDLNGKAAQDAALQVRTRLA--QVAATLLGVEPTAVRFADGRVMAGAQ 585

Query: 549 SPQSGVAFAEVLRAAQLSGVEGKGKSGASSSDPGADKISIH-------SYGAHFVEVRWQ 601
           S    +AFAE++  A L  V+       S+     D   +H       +Y A   EV   
Sbjct: 586 S----MAFAELVMKAYLQRVQLWSDGFYSTPKVHWDAKRMHGHPFFYFAYAAAVSEVVID 641

Query: 602 PDIARLRVSRVVTVIDAGRIINPRTGRNQIEGAVVMGLGMALFEETRYDQRNGKPVNNNL 661
                 ++ +   + DAG+ +NP     Q+EG  + G+G    EE  ++ ++GK + +  
Sbjct: 642 TLTGEWKLLQADLLYDAGQSLNPALDIGQVEGGFIQGMGWLTTEELWWN-KDGKLMTHAP 700

Query: 662 ADYVMATNADSP 673
           + Y +   +D P
Sbjct: 701 STYKIPAISDCP 712


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,141,976
Number of extensions: 88416
Number of successful extensions: 320
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 2
Length of query: 715
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 623
Effective length of database: 1,184,250
Effective search space: 737787750
Effective search space used: 737787750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)