BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0435.p (383 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313187|ref|YP_003777279.1| transcription regulator protein... 194 1e-50 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 84 3e-17 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 83 3e-17 gi|300309384|ref|YP_003773476.1| transcription regulator protein... 81 1e-16 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 79 6e-16 >gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 194 bits (492), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 136/219 (62%) Query: 1 VQDGLDSIQGAIADITVNAGQPAGVLKLNTSQAFGVEYVLPLMPAFLERYPAVTPDWSLD 60 V GL +I+ A+A++ GQPAG LK++ FG +Y++PL+ FL RYP + PDW + Sbjct: 69 VGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFE 128 Query: 61 NRPQDLIAGGFDAAIGGGFDLPLGMVARELARLQIVAVASPSFMRGKRRPRDPAGLGAFP 120 NRP DLI+ GFDAAI GG +L G+VARELA V +ASP+++ PA L Sbjct: 129 NRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAHPPLHSPADLAEHA 188 Query: 121 CVAMRSPSTSRVRTLIMRNGAGAEMAAVQNPVIVLDDPSAMCHAVLLGMGIGLMAVPHAL 180 + +RSP T RVR +R+ +G + + + D +A C G+GI L+A+PHAL Sbjct: 189 GILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAACEVAEAGLGITLVAMPHAL 248 Query: 181 PHLESGTLVQLLPGWYCDVGPLSLYFASQKLLPVPLSLY 219 P+LE GTLV++LP WY D G LSLYF + +LLP ++ Sbjct: 249 PYLEGGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVF 287 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 5/226 (2%) Query: 4 GLDSIQGAIADITVNAGQPAGVLKLNTSQAFGVEYVLPLMPAFLERYPAVTPDWSLDNRP 63 GL+ I+ A A +T + G+PAG L++ F + + M F+ YP V ++ L++ Sbjct: 72 GLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKVQLEFVLNDGR 131 Query: 64 QDLIAGGFDAAIGGGFDLPLGMVARELARLQIVAVASPSFMRGKRRPRDPAGLGAFPCVA 123 DLIA G D A GG +VAR+L + + +ASP ++ + P+ L A C+A Sbjct: 132 ADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQSLTDLTAHACLA 191 Query: 124 MRSPSTSRVRTLIMRNGAGAEMAAVQNPVIVLDDPSAMCHAVLLGMGIGLMAVPHALPHL 183 V L G E V P + ++ A G+GI L+ A L Sbjct: 192 TSQAPQHTVWKL--EGPHGPESVKV-TPRLCVNTAQGQLRAARAGLGIALLPTMLASEDL 248 Query: 184 ESGTLVQLLPGWYCDVGPLSLYFASQKLLPVPLS--LYFASQKSSR 227 +GTLV +LP + D + ++ LP +S + F + K R Sbjct: 249 RNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLER 294 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 105/193 (54%), Gaps = 4/193 (2%) Query: 21 QPAGVLKLNTSQAFGVEYVLPLMPAFLERYPAVTPDWSLDNRPQDLIAGGFDAAIGGGFD 80 +P+G L+++ +FG YV+P + + +RYP V + +L R D++ G+D ++ + Sbjct: 90 KPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVAVELTLAQRIPDMLEEGYDVSLVLARE 149 Query: 81 LP-LGMVARELARLQIVAVASPSFMRGKRRPRDPAGLGAFPCVAMRSPSTSRVRTLIMRN 139 LP G++ R+L + ASP+++ P+ PA L C+ + SP S + I+ Sbjct: 150 LPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQQPADLLNHACLQLVSP-ISPLDEWILEG 208 Query: 140 GAGAEMAAVQNPVIVLDDPSAMCHAVLLGMGIGLMAVPHALPHLESGTLVQLLPGWYC-D 198 G + AV++ V + AM A+ GMGIG++ + A+ L +GT+V++LP + Sbjct: 209 PEGGTVVAVKSNFQV-NVAEAMLTAIREGMGIGVLPIYSAVDALRAGTIVRVLPQHRLQN 267 Query: 199 VGPLSLYFASQKL 211 +G +LY + Q L Sbjct: 268 MGVYALYPSRQYL 280 >gi|300309384|ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 2/203 (0%) Query: 24 GVLKLNTSQAFGVEYVLPLMPAFLERYPAVTPDWSLDNRPQDLIAGGFDAAIGGGFDLPL 83 G L++ AFG + ++ + F+ ++P +T +W L +R D I+ G D AI G Sbjct: 86 GALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWLLHDRAADFISQGIDCAIQVGEVNDP 145 Query: 84 GMVARELARLQIVAVASPSFMRGKRRPRDPAGLGAFPCVAMRSPSTSRVRTLIMRNGAGA 143 +VA LA + + V +PS + G+ PR PA L P +A+ P+ R + G Sbjct: 146 SVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAELPWIAI--PAFYRREVTLTHAHTGE 203 Query: 144 EMAAVQNPVIVLDDPSAMCHAVLLGMGIGLMAVPHALPHLESGTLVQLLPGWYCDVGPLS 203 + P +V D A+ + + G+G+ + + + +G LVQLLP W P+ Sbjct: 204 QRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLNEDVAAGRLVQLLPDWQPAPLPVC 263 Query: 204 LYFASQKLLPVPLSLYFASQKSS 226 L + + P L + + K + Sbjct: 264 LLYPYARFQPARLRHFIDTMKEA 286 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%) Query: 5 LDSIQGAIADITVNAGQPAGVLKLNTSQAFGVEYVLPLMPAFLERYPAVTPDWSLDNRPQ 64 L++IQ +++ +N+ Q G L++ Q FGVE + PL F E++P +T + +L +R Sbjct: 73 LETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLITLNITLSDRTI 132 Query: 65 DLIAGGFDAAIGGGFDLPLGMVARELARLQIVAVASPSFMRGKRRPRDPAGLGAFPCVAM 124 DL+ GFD AI MVAR LA ++++A A+P F+ P PA L +P ++ Sbjct: 133 DLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTPAELRDYPFISY 192 Query: 125 RSPSTSRVRTLIMRNGAGAEMAAVQNPVIVLDDPSAMCHAV-LLGMGIGLMAVPHALPHL 183 + + +G ++ V++ V V + A C A+ + G GI + + Sbjct: 193 SYRAGGDDWSFRHVHGDTCQV-RVRSTVYV--NNGATCRAMAIAGQGIAIQPDFIVNAAI 249 Query: 184 ESGTLVQLLPGW 195 ++G LV+L GW Sbjct: 250 QAGQLVELFEGW 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,182,296 Number of extensions: 48693 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 20 Length of query: 383 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 296 Effective length of database: 1,207,925 Effective search space: 357545800 Effective search space used: 357545800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)