BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0434.p (744 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 204 3e-53 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 194 2e-50 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 192 8e-50 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 176 8e-45 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 156 6e-39 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 110/250 (44%), Positives = 149/250 (59%), Gaps = 3/250 (1%) Query: 421 RTLRDTNSNLELALTKSESATRA---KSSFLSNMSHEIRTPMNAVLGLTYLLEKTVLQSD 477 R LR+ E + E+A A + +FLS MSHEIRTPMNAVLG+ LL T L + Sbjct: 61 RLLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQ 120 Query: 478 QRDLVRKIIVAGHSLLGIINDILDVSKIEAGRLEVEHVPFRLSTVLENVVNVTAPGIGDK 537 Q + + I + H+LLGI+ND+LD SKI+ G++++ V F L+ V+E + +K Sbjct: 121 QAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREK 180 Query: 538 DVELVVGFNDVGVEYLYGDALRLEQILTNLTSNAIKFTAHGEISIHVAVVSEIGDRVMLR 597 V L+ + L GD R+ QIL NL NA+KFT GE+ + V + D +R Sbjct: 181 RVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSDHCRVR 240 Query: 598 FAVTDSGIGIPPERQQDIFQAFTQEDTSTTRRYGGTGLGLTICRHLVQLMNGEIGVASEP 657 F V DSGIG+ + + +F F Q D+S TR+YGGTGLGL+IC+ LV+LM G IGV S Sbjct: 241 FEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESAL 300 Query: 658 GQGSQFWFML 667 G GS FWF L Sbjct: 301 GTGSCFWFEL 310 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 155/242 (64%), Gaps = 1/242 (0%) Query: 427 NSNLELALTKSESATRAKSSFLSNMSHEIRTPMNAVLGLTYLLEKTVLQSDQRDLVRKII 486 +NL A K+E A AKS FL+++SHEIRTPMN VLG+ LL++T Q+D + K Sbjct: 880 ENNLVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYLDKAE 939 Query: 487 VAGHSLLGIINDILDVSKIEAGRLEVEHVPFRLSTVLENVVNVTAPGIGDKDVELVVGFN 546 ++ SLL ++ND+LD SK++A +L+++ F L N+ V A V L + + Sbjct: 940 ISAKSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALD 999 Query: 547 DVGVEYLYGDALRLEQILTNLTSNAIKFTAHGEISIHVAVVSEI-GDRVMLRFAVTDSGI 605 L GDA RL+Q+L NLT NA+KFT G I +H + + G V LR V+D+GI Sbjct: 1000 PQLPRRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGI 1059 Query: 606 GIPPERQQDIFQAFTQEDTSTTRRYGGTGLGLTICRHLVQLMNGEIGVASEPGQGSQFWF 665 GI +R DIF AFTQ + STTRRYGGTGLGL I +HLV LM G++ V+SEPG+GS+FWF Sbjct: 1060 GIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWF 1119 Query: 666 ML 667 L Sbjct: 1120 DL 1121 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 192 bits (488), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 111/252 (44%), Positives = 157/252 (62%), Gaps = 6/252 (2%) Query: 436 KSESATRAKSSFLSNMSHEIRTPMNAVLGLTYLLEKTVLQSDQRDLVRKIIVAGHSLLGI 495 +++ A AKS FL+ +SHEIRTPMN +LGL+ LL ++ L S QRD I A L+ I Sbjct: 340 EADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLVRI 399 Query: 496 INDILDVSKIEAGRLEVEHVPFRLSTVLENVVNVTAPGIGDKDVELVVGFNDVGVEYLYG 555 INDILD SKIE+G+L++E V F +++ + ++ P + KDV+ + + + G Sbjct: 400 INDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVVG 459 Query: 556 DALRLEQILTNLTSNAIKFTAHGEISIHV-AVVSEIG-DRVMLRFAVTDSGIGIPPERQQ 613 D RL+Q+L NL SNAIKFT G + + + A E G R L FA+TD+GIGI PE Q Sbjct: 460 DPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQ 519 Query: 614 DIFQAFTQEDTSTTRRYGGTGLGLTICRHLVQLMNGEIGVASEPGQGSQFWFMLPFQALP 673 +F+ F Q D+S +RR+GGTGLGL I ++LV+LM G I S PG+ ++F F+ L Sbjct: 520 QLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRF----SFEILC 575 Query: 674 PAAAXFCSSPVA 685 P A+ PV+ Sbjct: 576 PEASTPAPEPVS 587 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 122/281 (43%), Positives = 162/281 (57%), Gaps = 18/281 (6%) Query: 396 TNHKRLEKELNQYRQHLEGLVEQQTRTLRDTNSNLELALTKSESATRAKSSFLSNMSHEI 455 T LE E N + L+E Q L T L T+ E A + KS FL+NMSHE+ Sbjct: 428 TQQAELE-ETNAQLEEQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHEL 486 Query: 456 RTPMNAVLGLTYLL---EKTVLQSDQRDLVRKIIVAGHSLLGIINDILDVSKIEAGRLEV 512 RTP+N+ L L LL ++ L +Q + I AG+ LL +INDILD+SK+EAG+L++ Sbjct: 487 RTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDI 546 Query: 513 --EHVPF-RLSTVLENVVNVTA--PGIGDKDVELVVGFNDVGVEYLYGDALRLEQILTNL 567 E P +L+ L +TA G+G K VE+ G + + D RL QIL NL Sbjct: 547 VPESFPLTKLADELSASFAITAQQKGLGFK-VEVEPGVP----QRMETDIQRLGQILKNL 601 Query: 568 TSNAIKFTAHGEISIHVAVVSEIGDRVMLRFAVTDSGIGIPPERQQDIFQAFTQEDTSTT 627 SNAIKFT GE+S+ + + G R+ FAV D+GIGI ++ Q IF+AF Q D ST Sbjct: 602 LSNAIKFTEKGEVSLRI--YPDAGGRIA--FAVRDTGIGIGEDQHQFIFEAFRQADGSTH 657 Query: 628 RRYGGTGLGLTICRHLVQLMNGEIGVASEPGQGSQFWFMLP 668 R+YGGTGLGL+I R L L+ G+I V S G+GS F LP Sbjct: 658 RKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLP 698 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 156 bits (394), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 96/270 (35%), Positives = 146/270 (54%), Gaps = 8/270 (2%) Query: 395 ITNHKRLEKELNQYRQHLEGLVEQQTRTLRDTNSNLELALTKSESATRAKSSFLSNMSHE 454 +TN R + RQ L+ Q+ + T++ L+ A +ESA AKS F++ MSHE Sbjct: 641 LTNESRAVAQEESERQ--TNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHE 698 Query: 455 IRTPMNAVLGLTYLLE-KTVLQSDQRDLVRKIIVAGHSLLGIINDILDVSKIEAGRLEVE 513 +RTP+N++LG +L + ++D + I +G LL +I+ +LD++KIEAG++ + Sbjct: 699 LRTPLNSILGYAQILHVDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLA 758 Query: 514 HVPFRLSTVLENVVNVTAPGIGDKDVELVVGFNDVGVEYLYGDALRLEQILTNLTSNAIK 573 L LE +V + AP K + + + ++ D RL QIL NL NA+K Sbjct: 759 SDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVK 818 Query: 574 FTAHGEISIHVAVVSEIGDRVMLRFAVTDSGIGIPPERQQDIFQAFTQEDTSTTRRYGGT 633 FT HG +++ + EI F V D+GIGI + ++ IF F + + R GT Sbjct: 819 FTDHGGVTLRLRYAREIA-----YFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGT 873 Query: 634 GLGLTICRHLVQLMNGEIGVASEPGQGSQF 663 GLGL I R LV +M GE+ V S+ GQGS F Sbjct: 874 GLGLAISRMLVHIMGGELSVQSQVGQGSSF 903 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,012,362 Number of extensions: 78256 Number of successful extensions: 386 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 350 Number of HSP's successfully gapped: 38 Length of query: 744 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 652 Effective length of database: 1,184,250 Effective search space: 772131000 Effective search space used: 772131000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)