BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0431.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein ...   275   5e-75
gi|300312335|ref|YP_003776427.1| beta-lactamase class C protein ...    99   7e-22

>gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  275 bits (703), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 142/318 (44%), Positives = 200/318 (62%), Gaps = 9/318 (2%)

Query: 56  ALAPEVAWRDGGRIGFADFLRETHTNAMLVVQHGRLVYEHYPQGGQRAAVFPSYSVAKSM 115
           AL   V W+DG ++   DFL+ T  +A +V+Q G++VYE Y  G    + F S+SVAKS 
Sbjct: 76  ALEISVPWKDGSQLPVIDFLKTTSAHAFVVIQDGKIVYERYIDGYDANSRFTSFSVAKSF 135

Query: 116 LSDLVGVALAEGKIAALSDPVRKYL--PDLPEKFAAVTVDDLLNMHSGIRVEEKYDSAF- 172
           +S L GVAL +GKI +L +P+  YL   ++   +A +T+  LL+M SGI V+E Y  +  
Sbjct: 136 VSALTGVALQQGKIRSLDEPIGHYLNSDEIAPAYAGITIGQLLDMRSGIDVDENYGGSLA 195

Query: 173 SQIAFMYITTDLNRFMRGLDKTAFTPGQGFAYRSVDYLLLGMVLSAATGEPLTRYLERKL 232
           S +  M+++TDL+RF+       F PG  F YRSVD L+L  VL+ ATG  L+ + ++ L
Sbjct: 196 SPVVRMFVSTDLHRFIARRSGLRFAPGSRFEYRSVDTLVLSRVLAHATGMRLSDFAQQVL 255

Query: 233 WQPMGAAYGAGWSVDNKKHSVEKSFCCVNARAVDFARYGLLHLRQGRAGNVQVLPAAWMQ 292
           W+P+G    A WSVD+ +H VEK+FCC+N  A DFAR GLL+L  GR G+ QV+  +W  
Sbjct: 256 WEPLGMEQDASWSVDSGQHGVEKAFCCLNTTARDFARLGLLYLDGGRVGDQQVVSPSWAH 315

Query: 293 RPPEVGAADADFAYGRGWWLPRQPAARDGGSAPRDYTAIGIHGQYVYIDPVSDTVIVKLS 352
            P +         Y  GWW+P       G +  RD++AIG+ GQY+Y++P + TVIVKLS
Sbjct: 316 EPRQPVNHGEVLDYRDGWWIP------PGNADDRDFSAIGVFGQYIYVNPATRTVIVKLS 369

Query: 353 DHGNEQDEALTVAAFRSI 370
           D+G EQDE LT+ A RSI
Sbjct: 370 DYGVEQDEVLTMLAMRSI 387


>gi|300312335|ref|YP_003776427.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 36/299 (12%)

Query: 73  DFLRETHTNAMLVVQHGRLVYEHYPQGGQRAAVFPSYSVAKSMLSDLVGVALAEGKIAAL 132
           D++      A++VV+ GR+V + +  G        S S+AK++++  +  AL  GKIA+L
Sbjct: 96  DYMAHQRATAVVVVKDGRIVAQRFNYGRTPQMRMLSNSMAKTVVALGILKALELGKIASL 155

Query: 133 SDPVRKYLPDLPEK-FAAVTVDDLLNMHSGIRVEEKYDSAFSQIAFMYITTDLNRF--MR 189
            D    Y+P L    +    + +LL M SG R  E Y S   +  F+           ++
Sbjct: 156 DDHAEDYVPALKGTLYGRTQLVNLLRMASGARFTEDYTSNDDRAIFVRKLRREGTLAAVQ 215

Query: 190 GLDKTAFTPGQGFAYRSVDYLLLGMVLSAATGEPLTRYLERKLWQPMGAAYGAGWSVD-- 247
            + + A   G+ F Y      +LG+VL AATG+ + +++  ++WQPMGAA  A W ++  
Sbjct: 216 SISERAAPEGERFNYAGAQTSVLGLVLQAATGQDMCQWIGEQIWQPMGAAAEATWLLNPV 275

Query: 248 NKKHSVEKSFCCVNARAVDFARYGLLHLRQGRAGNVQVL----------PAAWMQRPPEV 297
           +++   +  F   NA   D+AR G+L    G A   QV+          PA   ++PP  
Sbjct: 276 DQQALAQGGF---NATVYDYARLGMLLANDGVANGQQVIAREHVLAMTDPA---RQPPAF 329

Query: 298 -------GAADADFAYGRGWWLPRQPAARDGGSAPRDYTAIGIHGQYVYIDPVSDTVIV 349
                        F YG   W+   P +       R +  +GI+GQ V++DP    V+V
Sbjct: 330 RPGVMLDSHGRTYFGYGYQVWI--MPGSH------RRFALLGIYGQAVFVDPELKLVMV 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,254,324
Number of extensions: 57105
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)