BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0426.p
         (93 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313862|ref|YP_003777954.1| hypothetical protein Hsero_4580...    59   1e-10
gi|300311457|ref|YP_003775549.1| hypothetical protein Hsero_2142...    55   8e-10

>gi|300313862|ref|YP_003777954.1| hypothetical protein Hsero_4580
          [Herbaspirillum seropedicae SmR1]
          Length = 86

 Score = 58.5 bits (140), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 9/94 (9%)

Query: 1  MRKLSLAFAVLALTSAAGAYAEVPYPADQPFVSSVSRAEVKQELIQAEQQGQIADGDN-Y 59
          M   +L  AVLAL++++ A AE PYP ++PFVS  +RA VK +L +A+ QG +   D+ Y
Sbjct: 1  MSAKTLIAAVLALSASSIALAEAPYPVEKPFVSQTTRAAVKADLARAQAQGTVNQVDSVY 60

Query: 60 PVAMPASSHLSRQDVRHDLQHAHNMHDDATYAGA 93
          PV       +S    + ++Q A ++    TYAGA
Sbjct: 61 PV-------VSNGAAKSEVQTAGSVAAS-TYAGA 86


>gi|300311457|ref|YP_003775549.1| hypothetical protein Hsero_2142
          [Herbaspirillum seropedicae SmR1]
          Length = 93

 Score = 55.5 bits (132), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 45/72 (62%)

Query: 22 EVPYPADQPFVSSVSRAEVKQELIQAEQQGQIADGDNYPVAMPASSHLSRQDVRHDLQHA 81
          E PYP +  F S+ +RA+V+ EL++A   G+IA  + YP+   A S LSRQDV++ L+ A
Sbjct: 22 EAPYPPETAFHSTKTRADVQAELVRARANGEIAVRNEYPIVHQAPSTLSRQDVQNQLRQA 81

Query: 82 HNMHDDATYAGA 93
           +      Y+GA
Sbjct: 82 SSTAQQDLYSGA 93


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.125    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 282,533
Number of extensions: 9844
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 93
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 30
Effective length of database: 1,321,565
Effective search space: 39646950
Effective search space used: 39646950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)