BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0423.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312964|ref|YP_003777056.1| hypothetical protein Hsero_3670...   369   e-103

>gi|300312964|ref|YP_003777056.1| hypothetical protein Hsero_3670
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  369 bits (947), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/309 (60%), Positives = 226/309 (73%), Gaps = 9/309 (2%)

Query: 36  WYQLQAPAQIRTVA------VAVLALAVLAALHGLWRRRWRPLLGFAVLCAGMLGWWSTL 89
           W+QL  PA  R +A      +A+ A A LA   G WR  W  L  FA+    M  WW  +
Sbjct: 28  WFQLPGPAWGRMLASGLWCCMALSAYAALAGAPGHWR--W-ALPAFALATLAMAVWWHGI 84

Query: 90  KPSHDRVWADDVARLLHIDIDGNHARLTNVRNFDWRSETDYTVRWETRDYDLDHLVTADL 149
           +PSH+R WADDVAR+L   + G+  RL NVRNFDWR+ETDY + WE+R YDL  LV+ADL
Sbjct: 85  RPSHEREWADDVARMLAPQVQGDIVRLENVRNFDWRTETDYDISWESRQYDLAQLVSADL 144

Query: 150 VLSYWMGPAIAHTLVSFGFDDGRYLTFSVEIRKEKGESFSALGGFFRKFETVLVASDERD 209
           +LSYWMGPAIAHTLVSFGF DGR L FS+EIR+E+GE+FSALGGFFRKFETV+VA+DERD
Sbjct: 145 LLSYWMGPAIAHTLVSFGFADGRRLVFSLEIRRERGEAFSALGGFFRKFETVIVAADERD 204

Query: 210 IVRVRSNVRGEDVYLYRLQVAPATLRKLFVGYAGEAARLEREPAFYNTLTSNCTTIVFDL 269
           I+R R+N RGEDVYLYRLQ+    LRK+F+GY   A++L + P FYNTLTSNCTTIVF+L
Sbjct: 205 IIRTRTNARGEDVYLYRLQLRHDQLRKVFLGYLERASQLRQHPRFYNTLTSNCTTIVFEL 264

Query: 270 ARAINPQLPFDYRLLASGYLAEYAYDVGGLTPGFDYAALHARGRITERALAAGNDARFSE 329
           AR ++P LP DYRLL SGY A+Y +D G LTPG+ +A L   GRIT RAL       +S 
Sbjct: 265 ARRLSPALPLDYRLLLSGYFADYVFDHGVLTPGYSFAQLRQAGRITGRALEGSAQGDYSR 324

Query: 330 LIRVGIPGI 338
           LIR G+PG+
Sbjct: 325 LIRQGVPGV 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,015,982
Number of extensions: 39585
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)