BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0422.p (351 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309384|ref|YP_003773476.1| transcription regulator protein... 412 e-116 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 155 5e-39 gi|300313187|ref|YP_003777279.1| transcription regulator protein... 150 2e-37 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 150 2e-37 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 139 4e-34 >gi|300309384|ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 412 bits (1059), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/299 (70%), Positives = 251/299 (83%) Query: 52 IQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTEDGERCY 111 +QTFVRIV+AGSLSAAA+QL TTQPTISRRLQ LERSLGVRLLQRSTHAMK+TEDGERCY Sbjct: 1 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 60 Query: 112 ERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMRRHPAITVEWL 171 ERA +LLAGW+ F+ ++RGA A G+LRVVVP+AFGQ+QLI PLA+FMR+HP ITVEWL Sbjct: 61 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 120 Query: 172 LYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTHPRDLAA 231 L+DR ADFI+ GIDCAIQVGEV+DP+VVAI LAEVPRM +AP++LA P P HP DLA Sbjct: 121 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE 180 Query: 232 MPWLAIPQFYRRDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLMLGSAWLLA 291 +PW+AIP FYRR+VTL + TGE +V+F+P+L +DSLYAL N AV G+G+ +GS+W+L Sbjct: 181 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN 240 Query: 292 EHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFIDTMREAMPAAVGSAARWPA 350 E + GRLV LLP W+ APLPV ++YPYARF PARLR+FIDTM+EAMPA V A W A Sbjct: 241 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGA 299 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 155 bits (392), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 147/289 (50%), Gaps = 5/289 (1%) Query: 47 DRIELIQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTED 106 DR + +Q F +V A S + AA L + T++ +Q LE L VRLL R+T + LT D Sbjct: 2 DRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPD 61 Query: 107 GERCYERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMRRHPAI 166 G YER + +LA + + R G LR+ VP + G+ L+ L +F R+P I Sbjct: 62 GAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDI 121 Query: 167 TVEWLLYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTHP 226 + + DR D + +DC I++GE+ D ++VA R+ + APA L ++ P Sbjct: 122 ELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTI 181 Query: 227 RDLAAMPWLAIPQFYR---RDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLM 283 DL A+ F R + G EV +L+ + A A++G G++ Sbjct: 182 EDLQQHK--AVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMV 239 Query: 284 LGSAWLLAEHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFID 332 +++ H+++GRLV +L W+ AP+P+S++Y + R ++R F+D Sbjct: 240 QAPLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVD 288 >gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 147/288 (51%), Gaps = 4/288 (1%) Query: 52 IQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTEDGERCY 111 I+ FV AGS SAAA QLG T + + + LE SLGVRL RST + LTE GER Sbjct: 7 IECFVAAAHAGSFSAAARQLGLTSAAVGKNVARLESSLGVRLFHRSTRKLSLTEAGERFL 66 Query: 112 ERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMRRHPAITVEWL 171 + L S ++ AG + G+L+V + FG++ ++ L EF+ R+P I +W Sbjct: 67 QEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWH 126 Query: 172 LYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTHPRDLAA 231 +R D I+ G D AI G P VVA LA R++ +PA L +P P DLA Sbjct: 127 FENRPVDLISEGFDAAIAGGTELSPGVVARELAPAHRVLLASPAYLDAHPPLHSPADLAE 186 Query: 232 MPWLAI--PQFYR-RDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLMLGSAW 288 + I PQ R R +L++ +G+ A V Q R++ A A G+G+ L + Sbjct: 187 HAGILIRSPQTGRVRPFSLRDR-SGQQAPVTLQQRMTMSDANAACEVAEAGLGITLVAMP 245 Query: 289 LLAEHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFIDTMRE 336 ++E G LV +LP W +S+ + AR PA+ R F+D + E Sbjct: 246 HALPYLEGGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVE 293 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 153/294 (52%), Gaps = 7/294 (2%) Query: 47 DRIELIQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTED 106 D+ + I TF + GSLSAAA G I RRL LE LGV+LLQR+T + LT + Sbjct: 2 DQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNE 61 Query: 107 GERCYERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLA-EFMRRHPA 165 G E +LA E + V A G L + P FG RQ +APL F+ H Sbjct: 62 GAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFG-RQHVAPLLPSFLAEHRD 120 Query: 166 ITVEWLLYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTH 225 +T+ L DR+AD I GID AI++ ++D +V+++LAE R++ APA L ++ TP Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQS 180 Query: 226 PRDLAAMPWLAI-PQFYRRDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLML 284 P +L LA+ + +R TL+ +G+V+ + + L N A+ G GL Sbjct: 181 PDELMRHNCLAMSSEGSQRGWTLRQ--SGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAW 238 Query: 285 GSAWLLAEHMEQGRLVPLLPGWEAAPLP-VSIIYPYARFYPARLRYFIDTMREA 337 S W + +E G LV +L + AAP P + ++ R P R+R F+D +R A Sbjct: 239 RSMWEVGAAIEAGELVTVLDKF-AAPAPSIYAVFAQRRHLPLRIRAFVDFLRHA 291 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 146/293 (49%), Gaps = 3/293 (1%) Query: 47 DRIELIQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTED 106 +++ I+ F+ + GS AA LG ++ +SR + LE LG RL+QR+T + LTE Sbjct: 2 NKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEA 61 Query: 107 GERCYERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPL-AEFMRRHPA 165 G ER ++A E + + G LR+ P FG L APL F+ RHP Sbjct: 62 GALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHL-APLWPMFLERHPE 120 Query: 166 ITVEWLLYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTH 225 I+++ L DR+ D I G D AI++ +SD +V +L V +PA L + TP H Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAH 180 Query: 226 PRDLAAMPWLAIPQFYRRDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLMLG 285 P +LA ++ +D N G V+ V RL ++ + AA+ G+G+ Sbjct: 181 PHELAQHQTISYSYNQSKDEWQFNGPEGPVS-VRVSSRLHVNNGDSCVQAALGGIGITRQ 239 Query: 286 SAWLLAEHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFIDTMREAM 338 +++ +++ G+LV +L + A L + +YP PA++R +D + EA Sbjct: 240 PTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAF 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,084,932 Number of extensions: 45604 Number of successful extensions: 345 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 299 Number of HSP's successfully gapped: 49 Length of query: 351 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 265 Effective length of database: 1,212,660 Effective search space: 321354900 Effective search space used: 321354900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)