BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0421.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...   188   1e-49
gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...    68   4e-13

>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  188 bits (478), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 110/125 (88%)

Query: 13  SGIAVLLVASLAIGLSATLAQDIVPAAATLASEQNRGKVVGTVMTGLLLGILLSRVLSGF 72
           SG+  LL ASLA+GL+ATLAQDIVPAAA+LA EQ+RG+VVGTVMTGLLLGILLSRV+SGF
Sbjct: 112 SGVGALLAASLAVGLTATLAQDIVPAAASLAPEQSRGRVVGTVMTGLLLGILLSRVVSGF 171

Query: 73  VAEHFGWRSMFVAASVSIALIGIAAWRGLPRFKATTHLPYGALLGSLGKLVQKHPALRRA 132
           VAEHFGWR+MFVAA+VSIALIG+AAWRGLPRF  TTHL YGAL+ SL  L +KH ALRRA
Sbjct: 172 VAEHFGWRAMFVAAAVSIALIGLAAWRGLPRFHPTTHLSYGALMASLATLFKKHGALRRA 231

Query: 133 SRCAG 137
           +   G
Sbjct: 232 ALAQG 236


>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score = 67.8 bits (164), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 2   LTGALLLAGASSGIAVLLVASLAIGLSAT-LAQDIVPAAATLASEQNRGKVVGTVMTGLL 60
           L  AL+  G +    VLL   LA+GL  T + Q ++  AA+ A E  RG+VVG   +G+ 
Sbjct: 86  LVCALVTVGLARSSYVLLAGMLAVGLLGTAMTQGLIAYAASAAGEDERGRVVGAAQSGVF 145

Query: 61  LGILLSRVLSGFVAEHFGWRSMFVAASVSIALIGIAAWRGLPRFKATTH-LPYGALLGSL 119
           +G+LLSRV SG V++  GWR +++ A++ +  +    W+ LP        L Y  L+ S+
Sbjct: 146 IGLLLSRVFSGAVSDVTGWRGVYLCAAIMMLCLAWPLWKRLPAIPVQADGLRYLTLIKSM 205

Query: 120 GKLVQKHPALR 130
             L++    L+
Sbjct: 206 WCLLRDDKVLQ 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 356,044
Number of extensions: 11718
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)