BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0414.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310608|ref|YP_003774700.1| major facilitator superfamily p...   477   e-136
gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...   103   3e-23

>gi|300310608|ref|YP_003774700.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  477 bits (1228), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 256/401 (63%), Positives = 315/401 (78%), Gaps = 17/401 (4%)

Query: 17  NPALW-VVIAAALVLSVVMGTRQTFGLYINPFSYDRGLPVTVIAFAIALHNLVWGFAQPF 75
           N   W VV+A A ++S+ +G+RQTFGL+I+P SYD GLPVT++AFAIALHNLVWG AQ  
Sbjct: 7   NRKPWLVVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVWGVAQSL 66

Query: 76  AGAASDRYGATPVVAFGAVTFAAGLALAAVAPSGLLLIIGLGLLVGIGISCTSFGVVLAS 135
           AGA +DR+G  PVVAFGAV +A GLAL A+AP+G +L++G+G+ +G+GISCTSFGVVL +
Sbjct: 67  AGALTDRHGPAPVVAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSFGVVLPA 126

Query: 136 VGRVATPQQRSMAMGIASAGGSLGQVLLVPLAQTVRESTGVSASLFVLAAIALAIAPAGL 195
           VGR    ++RS AMG+ SAGGSLGQVL++PL Q +R ++G+S +L VLA + LA+AP GL
Sbjct: 127 VGRSVPAERRSSAMGLVSAGGSLGQVLMLPLVQGLRATSGMSLALMVLALLVLAVAPLGL 186

Query: 196 ILDRGRKKSSAFSSSPATHP-AAEPPA--SSLKEVLTLAGRHHGYRLLTIGFFTCGFQLA 252
            L R             T P AA+ P    S++EV+  A  H GY+LLT+GFF CGFQLA
Sbjct: 187 ALAR-------------TGPVAADAPRLDYSVREVIAQATAHRGYQLLTLGFFACGFQLA 233

Query: 253 FIGTHLPGYLTLCHMPLGLGATALALIGLFNMAGSWGCGWLGGHFRQQYVLGWLYLVRSG 312
           FI THLPGYL LCHMP+GL ATALALIGLFNMAGSW CGWLGG +R Q VLGWLYLVRS 
Sbjct: 234 FIATHLPGYLELCHMPMGLAATALALIGLFNMAGSWACGWLGGRYRPQRVLGWLYLVRST 293

Query: 313 AIAAFLALPKTSASVMVFAAVMGLTWLGTVPLTSGLVAKVFGTRHLGTLFGVCFLSHQIG 372
           AI  F   PK+S SV +FAAVMGLTWLGTVPLT+GLVA++FGT H+GTLFGVCFLSHQ+G
Sbjct: 294 AIGLFFIAPKSSQSVTLFAAVMGLTWLGTVPLTTGLVARLFGTAHMGTLFGVCFLSHQVG 353

Query: 373 SFLGAWLGGYMFDLTGSYTMVWGATVAAGVLAALLHFAIND 413
           SFLGAWLGG+M ++TGSY+++W AT   G++AALLHF I +
Sbjct: 354 SFLGAWLGGWMLEVTGSYSLLWMATFVVGIVAALLHFPIEE 394


>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 180/388 (46%), Gaps = 24/388 (6%)

Query: 21  WVVIAAA-LVLSVVMGTRQTFGLYINPFSYDRGLPVTVIAFAIALHNLVWGFAQPFAGAA 79
           WVV+    LVL    G R T  + I P   + G   + I+  I+++  ++G   PF+ AA
Sbjct: 20  WVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTISVVISVNIALYGLIGPFSAAA 79

Query: 80  SDRYGATPVVAFGAVTFAAGLALAAVAPSGLLLIIGLGLLVG--IGISCTSFGVVLASVG 137
             R+G   VV    V  A+G AL+ +      +++  GLLVG   G++  + G  + S  
Sbjct: 80  MQRFGIRRVVLAALVLLASGTALSTLMHMPWHMLLSWGLLVGAGTGVAANTLGATIVSRW 139

Query: 138 RVATPQQRSMAMGIASAGGSLGQVLLVPLAQTVRESTGVSASLFVLAAIAL-AIAPAGLI 196
                 +R +AMG+ +A  + GQ++ +PL   +  S G  +  F+++A+AL AI    L+
Sbjct: 140 ---FETRRGLAMGLLTASAATGQMVFLPLMAAMVGSYGWRSVAFLVSAVALLAIPLVWLL 196

Query: 197 LDR-----GRKKSSAFSSSPATHPAAEPPASSLKEVLTLAGRHHGYRLLTIGFFTCGFQL 251
           L       G+K     S       +   P     + L  + R   + LL   FF CG   
Sbjct: 197 LPESPAAIGQKMLGQTSEIKDEGLSRRNPLFIALDALRTSVRMPDFWLLFASFFVCGLST 256

Query: 252 -AFIGTHLPGYLTLCHMPLGLG----ATALALIGLFNMAGSWGCGWLGGHFRQQYVLGWL 306
             +IGT    ++ +C+   G+     A+ LA +G+ ++ G+   GWL   +  + +L W 
Sbjct: 257 NGYIGTQ---FIAMCN-DYGINEVSSASILAAMGMLDLVGTTLSGWLSDRYNPRVLLFWY 312

Query: 307 YLVRSGAIAAFL--ALPKTSASVMVFAAVMGLTWLGTVPLTSGLVAKVFGTRHLGTLFGV 364
           Y +R  A+  FL  A       + +FA   GL W+ TVP T  L   VFG      +FG 
Sbjct: 313 YGLRGLALI-FLPYAFGLQYYGLTIFAIFYGLDWIATVPPTVRLANDVFGRLAAPIVFGW 371

Query: 365 CFLSHQIGSFLGAWLGGYMFDLTGSYTM 392
               HQ+G+     L GY+    G+YT+
Sbjct: 372 IVAGHQLGAATATTLAGYLRASLGNYTL 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,123,929
Number of extensions: 39956
Number of successful extensions: 277
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 5
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)