BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0412.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum ser...    73   4e-14

>gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 625

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 89/194 (45%), Gaps = 32/194 (16%)

Query: 37  FLQAWAA---LREQGDDVDTPQRLHYLLIDAALPTAQQLRAMAPTNALAGELANVSPPLT 93
           F   W A   LR QG      QRLHY+ I   LP       +    + A  L    P   
Sbjct: 54  FFATWRAFDELRGQGGA----QRLHYVAI---LPHPPAPHELIDDLSYAQALRAAWPLPL 106

Query: 94  PGYHRLLLEQGRVVLTLIIGEVAASLAQVDARVDLFLLQ--------DAAMWNAPQLKRL 145
           PG HRLLL++GR+ LTL+ G +   LA+++A VDLF L         DA  W AP  KRL
Sbjct: 107 PGTHRLLLDEGRITLTLVWGALEEELARLEAPVDLFYLHAHAQAFDPDAPAWQAPACKRL 166

Query: 146 ARLATPRAQ-LRMGGAWRAS-SAELAAAGFT-MDEDDKLTAHFTPRW-----KVAERAVP 197
           ARLA   AQ + +GGA R    A L   GF     +  L   + P W      VA R  P
Sbjct: 167 ARLAWTGAQAVVLGGAGRDDLQAALRQVGFAGQSREGALHLRYAPGWARPPSHVATRETP 226

Query: 198 ------QDRRALVI 205
                  +R A+VI
Sbjct: 227 LLRYPQANRHAIVI 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,030,717
Number of extensions: 39503
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)