BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0411.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum ser...   196   1e-51

>gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 625

 Score =  196 bits (497), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 131/201 (65%), Gaps = 23/201 (11%)

Query: 6   AAAPVVILANGMQSAALAQAAGLPLQTIRGQVSHLPAASLPDLPFVLCGDGYLTGAVNGL 65
           A APVVILA G Q++AL  AA LPL  +RGQV+HLPA   P LPF LCGDGYLT A  GL
Sbjct: 432 AQAPVVILAAGAQASALPIAAALPLNAVRGQVTHLPAEGFPRLPFALCGDGYLTRAHGGL 491

Query: 66  VSVGASYDRDNHDTALRADSHAGNLDKLRQLLPGVS-----PDIDPDGLSGRVGFRCVSA 120
           V +GA+YDR   D ALR DSHA NL +L+ +LP ++     P      L GRVG RC++ 
Sbjct: 492 VCMGATYDR-FQDPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPSLQGRVGQRCIAP 550

Query: 121 DRLPLVGALPDQAALAAGGEVQLRDAPRWPQLYGLLAYASRGLIWAPLAAEIVACALEDE 180
           DRLPLVGALP QA                  LYGLL YASRGLIWAPL AE++A  LE E
Sbjct: 551 DRLPLVGALPGQAG-----------------LYGLLGYASRGLIWAPLMAELLAAMLERE 593

Query: 181 PAPLGKDLLALLDPARFALKA 201
           P PL +DL+A LDPARF   A
Sbjct: 594 PLPLPRDLVAALDPARFGTTA 614


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 694,642
Number of extensions: 32335
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)