BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0407.p
         (480 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314037|ref|YP_003778129.1| FAD-dependent dehydrogenase [He...   843   0.0  

>gi|300314037|ref|YP_003778129.1| FAD-dependent dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 535

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/475 (86%), Positives = 449/475 (94%)

Query: 1   VRDEAAVLARHKGKQNIVPTPDTNYHFVARAPAGLSKRPIVIGTGPCGIFAGLILAEMGF 60
           ++DEAAVLAR+   +N+ PTPDT+YH+V RAPA L KRP+VIG GPCG+FA LILAEMGF
Sbjct: 61  LKDEAAVLARYAKARNVGPTPDTSYHYVTRAPATLKKRPVVIGFGPCGLFAALILAEMGF 120

Query: 61  NPLILERGKTVRERTKDTWGLWRQRELKPESNVQYGEGGAGTFSDGKLYSQVKDPKHYGR 120
           NP+ILERGKTVRERTKDTWGLWRQRELKPESNVQ+GEGGAGTFSDGKLYSQVKDPKHYGR
Sbjct: 121 NPIILERGKTVRERTKDTWGLWRQRELKPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR 180

Query: 121 KVLTEFVAADAPPEIMYVSKPHIGTFRLVKMVQLMREKIVALGGEFRFEQRVDDLVIEDG 180
           KVL+EFVAADAPPEIMYVSKPHIGTFRLVKM+QLMR+KI  LGGEFRFEQRV+D++IEDG
Sbjct: 181 KVLSEFVAADAPPEIMYVSKPHIGTFRLVKMIQLMRDKIEKLGGEFRFEQRVEDVLIEDG 240

Query: 181 QVRGVTLAGGEHIEADHVVLAIGHSARDTFQMLYDRGVYMEAKPFSIGFRAEHPQSLIDK 240
           ++RG+TLA GE IEADHVVLAIGHSARDTF+MLY+RGVY+EAKPFSIGFRAEHPQSLIDK
Sbjct: 241 KIRGLTLASGEQIEADHVVLAIGHSARDTFEMLYERGVYIEAKPFSIGFRAEHPQSLIDK 300

Query: 241 CRFGPSAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAASSEPERVVTNGMSQYSR 300
           CRFGPSAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAA+SEP RVVTNGMSQYSR
Sbjct: 301 CRFGPSAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR 360

Query: 301 NERNANSGIVVGISPADYPGHPLAGIEFQRKWESRAYELGGRNYDAPGQLVGDFLAKKPS 360
           NERNANSGIVVGISPADYPGHPLAGI FQR+WESRAYELGG NY+APGQLVGDF+A +PS
Sbjct: 361 NERNANSGIVVGISPADYPGHPLAGIAFQREWESRAYELGGGNYNAPGQLVGDFIANRPS 420

Query: 361 TQLGSVIPSYKPGVLLGDLDQSLPDYAIDAIRESLPFFDKQIRGYAMHDAVLTGVETRTS 420
           TQLGSV PSYKPGV LGDL+ SLP YAIDAIRE+LP FDKQIRGY+MHDAVLTG+ETRTS
Sbjct: 421 TQLGSVEPSYKPGVSLGDLNPSLPKYAIDAIREALPAFDKQIRGYSMHDAVLTGIETRTS 480

Query: 421 SPVRIRRNDDTLQSLNTKGLYPAGEGAGYAGGIMSASIDGIKVAEAVALAIMGST 475
           SP+RI+R+D TLQSLNTKGLYPAGEGAGYAGGIMSA+IDGI+VAEA+AL I+  +
Sbjct: 481 SPIRIKRDDHTLQSLNTKGLYPAGEGAGYAGGIMSAAIDGIRVAEALALDIVAQS 535


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,626,077
Number of extensions: 74097
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,198,455
Effective search space: 468595905
Effective search space used: 468595905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)