BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0405.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...    73   3e-14
gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...    56   4e-09

>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 29/300 (9%)

Query: 22  RLHQLVVPFGNDVKGGGALIGFASDEGVRRNHGRVGAAQGPDAIRRMLANLPAHRIT--- 78
           RL  +  P G DV      +G   D G      R G   GP  IR     L  + +    
Sbjct: 25  RLPHVEDPAGLDV----GFVGVPLDIG---TSNRSGTRFGPRQIRTESVLLRPYNMATRA 77

Query: 79  ------QLADAGNIDCHDGNLEQAQQRLAGKIADVMAQGVFPLVLGGGHEVAYGSFLGIM 132
                 ++AD G++  +  +L  + + +      + A G   + LGG H +     L I+
Sbjct: 78  APFDSLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKTISLGGDHTLT----LPIL 133

Query: 133 RHLGRSMSQRKLLIVNFDAHFDLREA---ERSTSGTPFKQIAEWCEWADVGFHYLCFGIS 189
           R L R      L  ++ DAH D+ +    E+   GTPF++  E  E        +  G+ 
Sbjct: 134 RALARYRGPVGL--IHVDAHADVNDTMNGEKIAHGTPFRRAFE--EGLLDPQRVVQIGLR 189

Query: 190 QLGNTPALFTRAQQLGVEYVSDTDVATRSLAELDAQLRLRLEDVTDVYLTIDLDVLPGEK 249
             G     F   +  G   V   +   RSLA L  ++R ++ D   VYLT D+D L    
Sbjct: 190 GTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGD-GPVYLTFDIDGLDPAF 248

Query: 250 APGVSAPAAFGMALEKVEKLVSSIRASGKLIAADIAECNPVYDRDGMTAKVAARLAHLIL 309
           APG   P   G+ +++  +++   +    +++AD+ E +P YD+ G TA VAA LA+ +L
Sbjct: 249 APGTGTPEIGGLTVQQGLEIIRGCKGL-DIVSADVVEVSPPYDQAGTTALVAANLAYEML 307


>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 36/239 (15%)

Query: 89  HDGNLEQAQQRLAGKIADVMAQGVFPLVLGGGHEVAYGSFLGIMRHLGRSMSQRKLLIVN 148
           H   + Q  Q +   +A  +A G  PL++GG H +A GS   +  H  RS   ++L ++ 
Sbjct: 65  HLEQVVQWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHC-RSQG-KELRVLW 122

Query: 149 FDAHFDLREAERSTSGTPFKQIAEWCEWADVGFHYLCFGISQL----GNTPALFTRA-QQ 203
            DAH D   ++ + +G     +   C         L  G + L    G TPAL  +   Q
Sbjct: 123 LDAHADANTSQSTPTGN-IHGMPVAC--------LLGVGPAALTAIGGQTPALQPQQICQ 173

Query: 204 LGVEYVSDTDVATRSLAELDAQ-----------LRLRLEDV-------TDVYLTIDLDVL 245
           +G+  V   +   R L EL  +           +R  +E+        T ++++ D+D L
Sbjct: 174 VGIRSVDREE--KRHLRELGVRVFDMRHIDEYGMRQTMEEALAGVGPQTHLHVSFDVDFL 231

Query: 246 PGEKAPGVSAPAAFGMALEKVEKLVSSIRASGKLIAADIAECNPVYDRDGMTAKVAARL 304
               APGV      G    + +  +  I  +G L + D+ E NP  D    TA++   L
Sbjct: 232 DAALAPGVGTAVPGGPTYREAQLCMEMIADTGALASLDVMELNPACDVRNQTAELVVDL 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,877
Number of extensions: 48042
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)