BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0404.p (183 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 137 5e-34 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 122 2e-29 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 121 3e-29 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 120 5e-29 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 119 2e-28 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 137 bits (345), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 1 MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60 ++ VS L KSF H +L +DL VA SQVVV+IGPSGSGKST LRC NGLE AE G++ + Sbjct: 5 IVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 Query: 61 CNQDLLVDGKMIADHALNDLRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEADT 120 C + ++ G+M+ + L+ LR +VGMVFQSFNLFPHL+VL+N+T+ P +RG + A Sbjct: 65 CGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQQ 124 Query: 121 LARALLAKVGRRRRGDG-PGPXRSRRRRR 148 A LL KVG + PG +++R Sbjct: 125 QALQLLEKVGLAHKAKAYPGTLSGGQKQR 153 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 122 bits (305), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/139 (48%), Positives = 88/139 (63%), Gaps = 9/139 (6%) Query: 1 MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60 MI V ++ K F H +L + L VA +VV +IGPSGSGKST+LRC NGLE E G Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERG---- 56 Query: 61 CNQDLLVDGKMIADHA--LNDLRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118 D+L+DG+ + ++ LRT+VGMVFQ FNLFPH +VLENVT GP + G + +A Sbjct: 57 ---DILIDGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQA 113 Query: 119 DTLARALLAKVGRRRRGDG 137 + A +LL KVG R D Sbjct: 114 RSEAMSLLDKVGLAARCDA 132 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 121 bits (304), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/136 (48%), Positives = 84/136 (61%), Gaps = 9/136 (6%) Query: 1 MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60 M+ + K F + +L GI+L + +VVV+IGPSGSGKSTLLRC N LE + G Sbjct: 1 MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGG---- 56 Query: 61 CNQDLLVDGKMI--ADHALNDLRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118 DLLVDG + ++ +R + GMVFQ FNLFP L+ LENV GPR +RG +EA Sbjct: 57 ---DLLVDGISVLSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEA 113 Query: 119 DTLARALLAKVGRRRR 134 + LA LLAKVG R Sbjct: 114 NALASELLAKVGLAER 129 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 120 bits (302), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/139 (46%), Positives = 87/139 (62%), Gaps = 9/139 (6%) Query: 1 MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60 MI V++L K F IL GID E+ A +VV +IGPSGSGKST LRC NGLE +G Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDG---- 56 Query: 61 CNQDLLVDGKMIADHA--LNDLRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118 D+ ++G + D LN LR ++GMVFQ FNLFPH++VLEN+ + P +++ + EA Sbjct: 57 ---DIFIEGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREA 113 Query: 119 DTLARALLAKVGRRRRGDG 137 +A LL KVG + D Sbjct: 114 VLVAEKLLQKVGLLDKIDA 132 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 86/137 (62%), Gaps = 4/137 (2%) Query: 1 MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60 ++ + L KSF +++L+G+ L+V Q+V IIG SGSGKSTLLRC NGLE + G I + Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 61 CNQDLLVDGKMIADHALNDLRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEADT 120 C D+ K+ L +LR QVG+VFQS+NLFPHL+V N+T+ I+ ++A T Sbjct: 64 CGHDIHHPDKL----NLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 121 LARALLAKVGRRRRGDG 137 +A +L VG + D Sbjct: 120 IAHKVLQLVGLENKKDA 136 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 458,432 Number of extensions: 14439 Number of successful extensions: 318 Number of sequences better than 1.0e-08: 76 Number of HSP's gapped: 262 Number of HSP's successfully gapped: 76 Length of query: 183 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 103 Effective length of database: 1,241,070 Effective search space: 127830210 Effective search space used: 127830210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)