BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0402.p (515 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311601|ref|YP_003775693.1| glutamine ABC transporter perip... 304 1e-83 gi|300311600|ref|YP_003775692.1| transcription regulator protein... 157 2e-39 gi|300312810|ref|YP_003776902.1| glutamine ABC transporter/signa... 128 1e-30 gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/sign... 93 4e-20 gi|300311002|ref|YP_003775094.1| amino acid ABC transporter/sign... 90 5e-19 >gi|300311601|ref|YP_003775693.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 304 bits (779), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 144/242 (59%), Positives = 186/242 (76%), Gaps = 1/242 (0%) Query: 270 RMLAAVSLAAGFTVAPALACAQTVDVIRVATDATFPPFEFFKDGKRTGFDIELIELLGKT 329 ++L A + +A A +VIRV TDATFPP EF KDGKRTGFD+ELIE L KT Sbjct: 6 KLLCAGMASLSLLIAAVPAAHANGEVIRVGTDATFPPMEFVKDGKRTGFDVELIEALAKT 65 Query: 330 MGKKVEWTDIDFKGLIPGLVSRRFDVASSAIYITEERRRVVNFTDPYYPGGLVVLTKASN 389 MGKKV+W DIDFKGLIPGLVS RFD+A+SAIY+T+ERR+VVNF+DPYY GGL VL + + Sbjct: 66 MGKKVQWIDIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDD 125 Query: 390 NAIKQPSDL-AGKKVSVQVGTKSANYLKEYYPQAERIEVEKNQEMFNLVEIGRADAAVTG 448 N+IK P DL GK+VSVQVGTKS YLK+ +P ER+EVEKNQ MF+L+ GR +A VTG Sbjct: 126 NSIKVPEDLNKGKRVSVQVGTKSVGYLKDNFPGVERVEVEKNQAMFDLLATGRVNAVVTG 185 Query: 449 KPAAIEYAKTRPGMKVLDKQVSIELYGYAVRKDLPQLTEEMNAALKKVKLDGSYDKLVQK 508 +PAA+EYA+T+P ++VLDK ++ ELYG+A+RK +LT ++N AL+ ++++G+Y L K Sbjct: 186 RPAAVEYARTQPLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMNGTYTALTDK 245 Query: 509 WL 510 W Sbjct: 246 WF 247 >gi|300311600|ref|YP_003775692.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 73/153 (47%), Positives = 108/153 (70%), Gaps = 2/153 (1%) Query: 12 GKPIAVRKLKELTGLPQSTLYRHLLPLKKWGLVQEQDN--FYAPGPLSVQLAWGFDHTSY 69 GKP++ +++ + P ST+YRHL LKKWGL+QE N + PGP VQLAWGFD S Sbjct: 71 GKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFDQNSN 130 Query: 70 LVSNAQPEMLQLAKKCGESVGLMVAVNDQVTCLDMVDSEQSLRCSFSKGRSHPLSRGASA 129 LVS ++ E+ L ++ GESVGL+VA+N Q+ C+ M +S+Q LRCSF+KGR+HPL +GASA Sbjct: 131 LVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFTKGRAHPLLKGASA 190 Query: 130 KAVLAHLPQAMAENIVERQLHGKDDDIVRLHGE 162 K++LA +P+ + + ++ QL K +++ L + Sbjct: 191 KSLLAFMPRKLQQKLLTDQLGDKPEELAALETQ 223 >gi|300312810|ref|YP_003776902.1| glutamine ABC transporter/signal transduction system periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 8/243 (3%) Query: 272 LAAVSLAAGFTVAPALACAQTVDVIRVATDATFPPFEFFKDGKRTGFDIELIELLGKTMG 331 L SL A +V A A A+T + VA D F PFEF + GFDI+L + + K +G Sbjct: 8 LVFASLVA-LSVVGASARAET---LVVACDTAFVPFEFKDRNQYVGFDIDLWDAIAKDIG 63 Query: 332 KKVEWTDIDFKGLIPGLVSRRFDVASSAIYITEERRRVVNFTDPYYPGGLVVLTKASNNA 391 + +DF G+IP L ++ DVA + I I +ER++V++F+D YY G ++ ++ Sbjct: 64 VTYKLQPMDFNGIIPALQTKNVDVALAGITIKDERKKVIDFSDGYYDSGFSLMVPVGSS- 122 Query: 392 IKQPSDLAGKKVSVQVGTKSANYLKEYYPQAERIEVEKNQEMFNLVEIGRADAAVTGKPA 451 IK +DLAGK ++V+ GT + +Y K + E + + ++ GR DAA+ P Sbjct: 123 IKSVADLAGKALAVKSGTSAFDYAKANFKATELHQFPNIDNAYLELQTGRVDAAMHDTPN 182 Query: 452 AIEYAKT--RPGMKVLDKQVSIELYGYAVRKDLPQLTEEMNAALKKVKLDGSYDKLVQKW 509 + Y T + KV+ Q+ YG K P L ++NAAL K+K DG Y ++ +KW Sbjct: 183 VLYYIATAGKGRAKVVGTQMMAHQYGIGFPKGSP-LVPKVNAALAKIKADGRYAEIYRKW 241 Query: 510 LSS 512 + Sbjct: 242 FGA 244 >gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 7/254 (2%) Query: 263 NHRRRLIRMLAAVSLAAGFTVAPA--LACAQTVDVIRVATDATFPPFEFF--KDGKRTGF 318 N ++ L+ + A LA+ +V+ A L ++ ++VA + +PPF F K G+ TGF Sbjct: 4 NIKQWLLAGVGAALLASSLSVSAADLLQSVKSSGTLKVALEGNYPPFNFKDPKTGELTGF 63 Query: 319 DIELIELLGKTMGKKVEWTDIDFKGLIPGLVSRRFDVASSAIYITEERRRVVNFTDPY-Y 377 ++++ +LL +G K +T ++ G++ GL + ++DV + + IT+ER++ +F+DPY Sbjct: 64 EVDVAKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTL 123 Query: 378 PGGLVVLTKASNNAIKQPSDLAGKKVSVQVGTKSANYLKEYYPQAERIEVEKNQEMFNLV 437 +++ K K DL GKK+ + GT K P + + E + Sbjct: 124 SSAQLIVRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKA-VPGIDVRTYPGSPEYLADL 182 Query: 438 EIGRADAAVTGKPAAIEYAK-TRPGMKVLDKQVSIELYGYAVRKDLPQLTEEMNAALKKV 496 GR DAA+ K T +K +++ G RK P+ +N AL + Sbjct: 183 AAGRIDAALNDSLLVGYILKSTNLPLKAGSPIGAVDKIGIPFRKGNPEFKAALNKALADI 242 Query: 497 KLDGSYDKLVQKWL 510 K DGS+ +KW Sbjct: 243 KADGSFKAASEKWF 256 >gi|300311002|ref|YP_003775094.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 279 Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 8/245 (3%) Query: 271 MLAAVSLAAGFTVAPALACAQTVDVIRVATDATFPPFEFFKDGKR--TGFDIELIELLGK 328 ++A +L G A LA Q + AT A P F R GFD+++ + + Sbjct: 17 LVACAALFPGLAQADRLAEIQARGTLVCATLANNEPLGFPDPQSRQVVGFDVDMCAAVAR 76 Query: 329 TMGKKVEWTDIDFKGLIPGLVSRRFDVASSAIYITEERRRVVNFTDPYY--PGGLVVLTK 386 +G ++E + +G +P L+ + D+ S+A+ T ER R ++FT +Y P L+V + Sbjct: 77 RLGVQMEQKSVTVEGRLPALIEGQADLVSAALGYTRERARQIDFTASHYQNPIKLIVQSD 136 Query: 387 ASNNAIKQPSDLAGKKVSVQVGTKSANYLKEYYPQAERIEVEKNQEMFNLVEIGRADAAV 446 + N I SDLA K++S + ++ P+A + F + GRAD Sbjct: 137 SGLNLI---SDLADKRISANRSSTPEQAVRRVLPKAMLQTFADTPQAFLALAQGRADGLA 193 Query: 447 TGKPAAIEYAKTRPG-MKVLDKQVSIELYGYAVRKDLPQLTEEMNAALKKVKLDGSYDKL 505 P+ I + G K ++ +S E V+K +L + +NAAL ++ DG D L Sbjct: 194 ISMPSGIRFVNESAGRFKFVEGALSWEPTALGVKKGERRLRDAVNAALAALEKDGEIDAL 253 Query: 506 VQKWL 510 KW Sbjct: 254 WTKWF 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,561,154 Number of extensions: 63534 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 16 Length of query: 515 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 426 Effective length of database: 1,198,455 Effective search space: 510541830 Effective search space used: 510541830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)