BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0401.p (539 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 468 e-133 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 406 e-114 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 403 e-113 gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sen... 399 e-112 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 384 e-107 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 468 bits (1205), Expect = e-133, Method: Compositional matrix adjust. Identities = 252/492 (51%), Positives = 352/492 (71%), Gaps = 7/492 (1%) Query: 14 SQLKISARLAIGFTLVCVLLIVVTLLGIIQMAQQKQRMDEITKINNVEASEASSMYLSIT 73 S +K+ RL +GF V +LL++VT GI M Q + R + ++ N E++ M ++ Sbjct: 3 SGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVG 62 Query: 74 ERALALRNMILLGENPPEIDAEMKRVDTQAKKYAAAEKKLEAMLKSESTTNPEERQLFAA 133 ER+++LRN++L P ++D E + ++ Q+ KY A +KL+ + S T+ EE+ Sbjct: 63 ERSISLRNLMLPAA-PEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPK 121 Query: 134 ISETAKLANGYIRQVTELILAGKRDEAYAV---LRNEFRPVQRKWWDQLNNFIVLENKQN 190 I+ A A I + E GKR EAY + L+ ++ PVQ+ W +L LE++ N Sbjct: 122 IAAQASKAEKLINEAVEF---GKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLN 178 Query: 191 EDASNNADVAYVNARFMMLLFGGLALVVSIMAAYLITRSVLSQLGGEPSYANQIATRIAH 250 ++A+ + VAY AR +MLL + +V +++AA+ +TR +L +LGGEP YA QIA +IA Sbjct: 179 KEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAE 238 Query: 251 GDLTVNIETRPSDQDSLLFSIKSMRDALAQIVGQVRAGTDTIATASSQIAKGNLDLSSRT 310 GDL V I+TR D DSL+ +++ MRD LA IV +VR G++TI TASS+IA+GNLDLS RT Sbjct: 239 GDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRT 298 Query: 311 EQQASSLEETASSMEELASTVKQNSGSAVQAHELAVSASDVASKAGEVVQQVITTMGLIN 370 EQQA +LEETASSME+L STVKQN+ +A QA++LA++ASDVA + G +V QV+ TM IN Sbjct: 299 EQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSIN 358 Query: 371 NSSHKIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAK 430 SS K+ +I+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAK Sbjct: 359 ASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 418 Query: 431 EIKVLITDSVKQVDIGRSLVEQAGTTMGEVVGSVRKVNGMVAEISQSSRQQSEGIEQIND 490 EIKVLI DSV +V+ G LVEQAG+TM ++V S+R+V ++ EI+ ++R+QS GIEQ+N+ Sbjct: 419 EIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNE 478 Query: 491 AVAQMDNVTQQN 502 A+ Q+D++TQQN Sbjct: 479 AIIQIDDMTQQN 490 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/503 (49%), Positives = 326/503 (64%), Gaps = 27/503 (5%) Query: 13 LSQLKISARLAIGFTLVCVLLIVVTLLGIIQMAQQKQRMDEITKINNVEASEASSMYLS- 71 +KI +LA+GF + VL I+V+ I ++ + I + V+ + + +Y + Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSG---ISLSSIRALTSSIKAVLAVQDQKLAPLYAAR 58 Query: 72 --ITERALALRNMILLGENPPEIDAEMKRVDTQAKKYAAAEKKLEAMLKSESTTNPEERQ 129 + + +A RN + + + E+ VD Q + Y A K L P Sbjct: 59 EALDQTGIAARNAYVF-RSDADAQKELAIVDEQKQLYLKAIKDL----------GP---- 103 Query: 130 LFAAISETAKLANGYIRQVTELIL------AGKRDEAYAVLRNEFRPVQRKWWDQLNNFI 183 LFA E K+ +G ++ EL +G+ +E L NE P++R+ + + Sbjct: 104 LFAGNKEFEKVRSGMLQMAEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVL 163 Query: 184 VLENKQNEDASNNADVAYVNARFMMLLFGGLALVVSIMAAYLITRSVLSQLGGEPSYANQ 243 +N A + D A + + + +V+SI+ A L+TR +L QLGGEP+YA Q Sbjct: 164 AQVEAENNRAQDATDKMAQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQ 223 Query: 244 IATRIAHGDLTVNIETRPSDQDSLLFSIKSMRDALAQIVGQVRAGTDTIATASSQIAKGN 303 IA +IA GDLT N++T+ D SLLF+IK+MRD+L IV QVR GT TI ASS+IA GN Sbjct: 224 IAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGN 283 Query: 304 LDLSSRTEQQASSLEETASSMEELASTVKQNSGSAVQAHELAVSASDVASKAGEVVQQVI 363 LDLSSRTEQQASSLEETAS+MEEL +TVKQN+ +A QA +LAVSAS+VAS+ GEVV QV+ Sbjct: 284 LDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVV 343 Query: 364 TTMGLINNSSHKIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQ 423 TTM IN SS KIV+IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQ Sbjct: 344 TTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 403 Query: 424 RSATAAKEIKVLITDSVKQVDIGRSLVEQAGTTMGEVVGSVRKVNGMVAEISQSSRQQSE 483 RSATAAKEI LI DSV Q++ G SLVEQAG TM VV SV++V +VAEIS +S++QS Sbjct: 404 RSATAAKEITELINDSVSQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSH 463 Query: 484 GIEQINDAVAQMDNVTQQNAALV 506 GI Q+N A+ MD TQQN+ALV Sbjct: 464 GITQVNTAITHMDEATQQNSALV 486 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/494 (49%), Positives = 337/494 (68%), Gaps = 3/494 (0%) Query: 13 LSQLKISARLAIGFTLVCVLLIVVTLLGIIQMAQQKQRMDEITKINNVEASEASSMYLSI 72 +++LK+S RLA+GF V VLL+V++L+G+ MA K + +I NN + A M S+ Sbjct: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVA-NNQQGGLADVMNNSV 59 Query: 73 TERALALRNMILLGENPPEIDAEMKRVDTQAKKYAAAEKKLEAMLKSESTTNPEERQLFA 132 RALA+RN+ L E P I E++R+ Q K Y A +KL M TT E +LF Sbjct: 60 RIRALAIRNIALFQE-PALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTR-REHELFD 117 Query: 133 AISETAKLANGYIRQVTELILAGKRDEAYAVLRNEFRPVQRKWWDQLNNFIVLENKQNED 192 I++ A + Q L K E ++L + RPVQ KW D L+ E++ N Sbjct: 118 LIAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQ 177 Query: 193 ASNNADVAYVNARFMMLLFGGLALVVSIMAAYLITRSVLSQLGGEPSYANQIATRIAHGD 252 AS AD Y + ++++++ AA+LI RSVL QLGGEP+ A ++A +IA G+ Sbjct: 178 ASAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGN 237 Query: 253 LTVNIETRPSDQDSLLFSIKSMRDALAQIVGQVRAGTDTIATASSQIAKGNLDLSSRTEQ 312 L V+I DQ SL+ S+++MR L +IV ++ ++I+TA+SQIA GNLDLS RTE+ Sbjct: 238 LAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEE 297 Query: 313 QASSLEETASSMEELASTVKQNSGSAVQAHELAVSASDVASKAGEVVQQVITTMGLINNS 372 QA+SLEETASSMEE+ STV+QN+ +A Q H+LA SAS A K GEVV++V+ TM I+ S Sbjct: 298 QAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQS 357 Query: 373 SHKIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEI 432 ++KI EII+ ++GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA++AKEI Sbjct: 358 AYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEI 417 Query: 433 KVLITDSVKQVDIGRSLVEQAGTTMGEVVGSVRKVNGMVAEISQSSRQQSEGIEQINDAV 492 + LI SV+ V+ G+ LV++AG TM EVV S+++VN +++EI+ +S +QS GI QIN A+ Sbjct: 418 RGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAI 477 Query: 493 AQMDNVTQQNAALV 506 +QMD VTQQNAALV Sbjct: 478 SQMDEVTQQNAALV 491 >gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 399 bits (1024), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/496 (48%), Positives = 338/496 (68%), Gaps = 9/496 (1%) Query: 11 MKLSQLKISARLAIGFTLVCVLLIVVTLLGIIQMAQQKQRMDEITKINNVEASEASSMYL 70 M ++L +S+RL GF +V L++++ + + ++A+ +++ IT++NNVE S+M Sbjct: 1 MDFTRLTVSSRLKFGFGVVLFLILLIVGIALKKLAEVNRQLVSITEVNNVEIYHLSTMRA 60 Query: 71 SITERALALRNMILLGENPPEIDAEMKRVDTQAKKYAAAEKKLEAMLKSESTTNPEERQL 130 + E++LA R I L P +++ + Q Y +E L + T E+Q Sbjct: 61 AAYEQSLASRG-IGLALTPEDLNQNANNLQRQIGLYTQSEAALAKLFADLQETTDTEKQA 119 Query: 131 FAAISE-TAKLANGYIRQVTELILAGKRDEAYAVLRNEFRPVQ---RKWWDQLNNFIVLE 186 AAI + +A L+ G + + +L A K +E ++ +Q RK +L+ F E Sbjct: 120 LAAIQKMSAGLSPG-LSNMIDLAKAQKTEELKPIMTGPLGKMQADRRKALAELSAF---E 175 Query: 187 NKQNEDASNNADVAYVNARFMMLLFGGLALVVSIMAAYLITRSVLSQLGGEPSYANQIAT 246 +K N +A + A +AR +++ G +AL+ +MAA LITRSVL QLGGEP+YA+++A Sbjct: 176 DKLNNEAKDEALAVSASARKLLIALGVIALLCGLMAAVLITRSVLRQLGGEPAYASRLAA 235 Query: 247 RIAHGDLTVNIETRPSDQDSLLFSIKSMRDALAQIVGQVRAGTDTIATASSQIAKGNLDL 306 +IA GDL ++ +SL+ S+K+M + L IV +VR+GTD IATASSQIA GNLDL Sbjct: 236 QIAKGDLRTEVKADTRHPESLMMSMKTMNEGLRGIVREVRSGTDAIATASSQIASGNLDL 295 Query: 307 SSRTEQQASSLEETASSMEELASTVKQNSGSAVQAHELAVSASDVASKAGEVVQQVITTM 366 SSRTE+QASSLEETAS+ME+L +TVKQN+ SA +A+ LA AS VAS++G++V++V+TTM Sbjct: 296 SSRTEEQASSLEETASAMEQLTATVKQNADSAGEANRLAAEASAVASQSGQLVKEVVTTM 355 Query: 367 GLINNSSHKIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 426 I +SS KIV+IISVIDGI+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+ Sbjct: 356 AAIEDSSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSS 415 Query: 427 TAAKEIKVLITDSVKQVDIGRSLVEQAGTTMGEVVGSVRKVNGMVAEISQSSRQQSEGIE 486 AA+EIK LI DSV +V G +LV +AG TM +VV SV +V ++ IS SS +QS+GI+ Sbjct: 416 AAAREIKALIDDSVDKVASGSALVNRAGDTMSDVVSSVDRVVSVIGAISDSSAEQSKGIQ 475 Query: 487 QINDAVAQMDNVTQQN 502 +IN A++QMD VTQQN Sbjct: 476 EINHAISQMDQVTQQN 491 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/493 (48%), Positives = 323/493 (65%), Gaps = 11/493 (2%) Query: 11 MKLSQLKISARLAIGFTLVCVLLIVVTLLGIIQMAQQKQRMDEITKINNVEASEASSMYL 70 MKL +KIS RLA+ F ++ ++ ++T +G+ ++ + I + + + A + Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 71 SITERALALRNMILLGENPPEIDAEMKRVDTQAKKYAAAEKKLEAMLKSESTTNPEERQL 130 ++ A LRN LLG N E + R + K A K+E +L + R+L Sbjct: 61 NVNGAARNLRNA-LLGRNLEEATRYLDRSAANSAKTTEALGKMEKIL-----STARGREL 114 Query: 131 FAAISETAKLANGYIRQVTELILAGKRDEAYAVLRNEFRPVQRKWWDQLNNFIVLENKQN 190 F +I E N ++ ELI K++EA +L + P Q K++ L+ F+ + Sbjct: 115 FQSIQEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLM 174 Query: 191 EDASNNADVAYVNARFMMLLFGGLALVVSIMAAYLITRSVLSQLGGEPSYANQIATRIAH 250 E + +A MML +A+ + ++AA+L+TRS+ L + A +A+ +A Sbjct: 175 EQSVTEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPL----NEAVSVASAVAA 230 Query: 251 GDLTVNIETRPSDQD-SLLFSIKSMRDALAQIVGQVRAGTDTIATASSQIAKGNLDLSSR 309 GDLTV I D+ +LL ++KSM D+L +IV +VR G+DTI TAS++IA GNLDLSSR Sbjct: 231 GDLTVQIGATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSR 290 Query: 310 TEQQASSLEETASSMEELASTVKQNSGSAVQAHELAVSASDVASKAGEVVQQVITTMGLI 369 TE+QA +LEETAS+MEEL STVKQN+ +A QA+ LA +AS+VA + G VV QV+ TMG I Sbjct: 291 TEEQAGALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEI 350 Query: 370 NNSSHKIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAA 429 N++S KIV+IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AA Sbjct: 351 NDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAA 410 Query: 430 KEIKVLITDSVKQVDIGRSLVEQAGTTMGEVVGSVRKVNGMVAEISQSSRQQSEGIEQIN 489 KEIK LI DSV +VD G LVEQAGTTM EVV SVR+V +VAEIS +S +QS+GIEQIN Sbjct: 411 KEIKALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQIN 470 Query: 490 DAVAQMDNVTQQN 502 A+ QMD VTQQN Sbjct: 471 HAITQMDQVTQQN 483 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,193,824 Number of extensions: 38980 Number of successful extensions: 566 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 348 Number of HSP's successfully gapped: 72 Length of query: 539 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 449 Effective length of database: 1,193,720 Effective search space: 535980280 Effective search space used: 535980280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)