BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0395.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314036|ref|YP_003778128.1| hypothetical protein Hsero_4759...   244   3e-66
gi|300310968|ref|YP_003775060.1| phasin family protein protein [...   209   1e-55

>gi|300314036|ref|YP_003778128.1| hypothetical protein Hsero_4759
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  244 bits (623), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 159/186 (85%)

Query: 1   MFSYQDQFSAATKTHFQAQLDLINTITTKTFEGLEKIVELNLSAAKASLEESAATAQQFA 60
           MFSYQDQFSAATK + QA LDLIN++T K FEG+EKIVELNLSA KA+LEE+AA A+Q A
Sbjct: 1   MFSYQDQFSAATKANLQAHLDLINSLTAKAFEGVEKIVELNLSATKATLEEAAAAAKQLA 60

Query: 61  SIKDPQELLALAQAQAQPTAEKAAAYGRHLASIVSATQAELTKATEAQVAETSRKVSALV 120
             KDPQELL+LA AQAQP AEKA AYGRHLA IVS+TQAE TKA EAQ+AETSRK+SAL+
Sbjct: 61  GAKDPQELLSLATAQAQPGAEKATAYGRHLAGIVSSTQAEFTKAAEAQIAETSRKLSALI 120

Query: 121 EEISKNAPAGSENAVALLKSAIGNANASYEQLTKNTKQAVETLEGHLSNAAKQFTQVAEK 180
           +EI+KNAP GSE AV++LK+ + NANA+YEQL+KN+KQAVETLE +L+NA KQFT  AEK
Sbjct: 121 DEITKNAPPGSEQAVSILKATLTNANAAYEQLSKNSKQAVETLEANLANATKQFTAAAEK 180

Query: 181 TTARKK 186
           T A  +
Sbjct: 181 TVASTR 186


>gi|300310968|ref|YP_003775060.1| phasin family protein protein
           [Herbaspirillum seropedicae SmR1]
          Length = 187

 Score =  209 bits (531), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 144/187 (77%), Gaps = 2/187 (1%)

Query: 1   MFSYQDQFSAATKTHFQAQLDLINTITTKTFEGLEKIVELNLSAAKASLEESAATAQQFA 60
           M +Y +QFSAA K + +AQ+ L + + +KTFEG+EK+V+LNL AA+++LEES A AQ+  
Sbjct: 1   MTTYTEQFSAAAKANAEAQIALFSQLASKTFEGVEKLVDLNLKAARSTLEESQAAAQKLF 60

Query: 61  SIKDPQELLALAQAQAQPTAEKAAAYGRHLASIVSATQAELTKATEAQVAETSRKVSALV 120
           + KDPQE  AL  A AQPT EK+ AYGRHL+ I S+TQAELTKA EAQ+AE +RKV A++
Sbjct: 61  AAKDPQEFFALTSAHAQPTLEKSVAYGRHLSGIFSSTQAELTKAAEAQIAEVNRKVVAMI 120

Query: 121 EEISKNAPAGSENAVALLKSAIGNANASYEQLTKNTKQAVETLEGHLSNAAKQFTQVAEK 180
           +E++KNAPAGSE AV++LKSAIGN +A YEQ TKN KQA E LE +++NA +Q +Q   K
Sbjct: 121 DEVAKNAPAGSEQAVSVLKSAIGNMSAGYEQFTKNAKQAAEVLEANVTNAVEQMSQAGAK 180

Query: 181 TT--ARK 185
            T  ARK
Sbjct: 181 VTRGARK 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.115    0.284 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 317,567
Number of extensions: 8009
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 128 (53.9 bits)