BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0391.p
         (429 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310608|ref|YP_003774700.1| major facilitator superfamily p...   283   2e-77
gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...   110   2e-25

>gi|300310608|ref|YP_003774700.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  283 bits (724), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/384 (43%), Positives = 231/384 (60%), Gaps = 2/384 (0%)

Query: 13  VLLASGLVLTLAMGVRHGLGFWLQPISQAHGWTRETFSLAIALQNLMWGVFGPFAGMAAD 72
           V+LA   ++++A+G R   G ++ P+S  HG      + AIAL NL+WGV    AG   D
Sbjct: 13  VVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVWGVAQSLAGALTD 72

Query: 73  RYGTARVIVIGALLYMGGLLWMALVDQPMLFAVGSGVLIGAALSCTAFGAISGIVGRSAP 132
           R+G A V+  GA+ Y  GL   AL     +  +G GV IG  +SCT+FG +   VGRS P
Sbjct: 73  RHGPAPVVAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSFGVVLPAVGRSVP 132

Query: 133 PEKRSLAFGISSAAGSFGQFVMMPVEQQLISVTGWQQAFYWLSALVVAVMVP-MAFRLRE 191
            E+RS A G+ SA GS GQ +M+P+ Q L + +G   A   L+ LV+AV    +A     
Sbjct: 133 AERRSSAMGLVSAGGSLGQVLMLPLVQGLRATSGMSLALMVLALLVLAVAPLGLALARTG 192

Query: 192 PKLAHSGKQEQSIWEATREAFAYRPFQFLIAGYFVCGFQVVFIGAHLPSYLKDKGLMDPN 251
           P  A + + + S+ E   +A A+R +Q L  G+F CGFQ+ FI  HLP YL +   M   
Sbjct: 193 PVAADAPRLDYSVREVIAQATAHRGYQLLTLGFFACGFQLAFIATHLPGYL-ELCHMPMG 251

Query: 252 IAVAALALIGLFNIFGSYYAGKLGGFLPKRYLLSTIYFSRTVAISLFLLAPLSSWSVYIF 311
           +A  ALALIGLFN+ GS+  G LGG    + +L  +Y  R+ AI LF +AP SS SV +F
Sbjct: 252 LAATALALIGLFNMAGSWACGWLGGRYRPQRVLGWLYLVRSTAIGLFFIAPKSSQSVTLF 311

Query: 312 SAAMGLLWLSTVPLTNGIIAGIFGLKHLSMLSGFVFLSHQIGSFLGVWLGGYLFTREGSY 371
           +A MGL WL TVPLT G++A +FG  H+  L G  FLSHQ+GSFLG WLGG++    GSY
Sbjct: 312 AAVMGLTWLGTVPLTTGLVARLFGTAHMGTLFGVCFLSHQVGSFLGAWLGGWMLEVTGSY 371

Query: 372 NTVWMITIGLGLFATVMNLPVNEK 395
           + +WM T  +G+ A +++ P+ E 
Sbjct: 372 SLLWMATFVVGIVAALLHFPIEEA 395


>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 171/374 (45%), Gaps = 23/374 (6%)

Query: 19  LVLTLAMGVRHGLGFWLQPISQAHGWTRETFSLAIALQNLMWGVFGPFAGMAADRYGTAR 78
           LVL  + G+R      + P+ Q  GW R T S+ I++   ++G+ GPF+  A  R+G  R
Sbjct: 28  LVLLCSAGIRATPSVMILPLEQEFGWNRSTISVVISVNIALYGLIGPFSAAAMQRFGIRR 87

Query: 79  VIVIGALLYMGGLLWMALVDQPMLFAVGSGVLIGAALSCTAFGAISGIVGRSAPPEKRSL 138
           V++   +L   G     L+  P    +  G+L+GA     A    + IV R     +R L
Sbjct: 88  VVLAALVLLASGTALSTLMHMPWHMLLSWGLLVGAGTGVAANTLGATIVSRWF-ETRRGL 146

Query: 139 AFGISSAAGSFGQFVMMPVEQQLISVTGWQQAFYWLSALVVAVMVPMAFRLREPKLAHSG 198
           A G+ +A+ + GQ V +P+   ++   GW+   + +SA V  + +P+ + L     A  G
Sbjct: 147 AMGLLTASAATGQMVFLPLMAAMVGSYGWRSVAFLVSA-VALLAIPLVWLLLPESPAAIG 205

Query: 199 K----QEQSI--------------WEATREAFAYRPFQFLIAGYFVCGFQVV-FIGAHLP 239
           +    Q   I               +A R +     F  L A +FVCG     +IG    
Sbjct: 206 QKMLGQTSEIKDEGLSRRNPLFIALDALRTSVRMPDFWLLFASFFVCGLSTNGYIGTQFI 265

Query: 240 SYLKDKGLMDPNIAVAALALIGLFNIFGSYYAGKLGGFLPKRYLLSTIYFSRTVAISLFL 299
           +   D G+ + + A + LA +G+ ++ G+  +G L      R LL   Y  R +A+    
Sbjct: 266 AMCNDYGINEVSSA-SILAAMGMLDLVGTTLSGWLSDRYNPRVLLFWYYGLRGLALIFLP 324

Query: 300 LA-PLSSWSVYIFSAAMGLLWLSTVPLTNGIIAGIFGLKHLSMLSGFVFLSHQIGSFLGV 358
            A  L  + + IF+   GL W++TVP T  +   +FG     ++ G++   HQ+G+    
Sbjct: 325 YAFGLQYYGLTIFAIFYGLDWIATVPPTVRLANDVFGRLAAPIVFGWIVAGHQLGAATAT 384

Query: 359 WLGGYLFTREGSYN 372
            L GYL    G+Y 
Sbjct: 385 TLAGYLRASLGNYT 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,477,205
Number of extensions: 67040
Number of successful extensions: 364
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,203,190
Effective search space: 410287790
Effective search space used: 410287790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)