BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0387.p (209 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbasp... 333 6e-93 gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbasp... 202 2e-53 gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurizatio... 178 2e-46 gi|300313969|ref|YP_003778061.1| isovaleryl-CoA dehydrogenase [H... 69 3e-13 gi|300310260|ref|YP_003774352.1| acyl-CoA dehydrogenase [Herbasp... 69 4e-13 >gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 421 Score = 333 bits (854), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 159/205 (77%), Positives = 184/205 (89%), Gaps = 2/205 (0%) Query: 1 VRSGLWGISVPKEYGGAGVSYVTLAQVTAIIAEADGSLGQIPQNHFYAVEIIRVNGSDAQ 60 VRSGLWGI+VPKEYGGAGVSY TLA+V A I+ ADGS+GQIPQNHFYAVE+IRVNGS++Q Sbjct: 71 VRSGLWGITVPKEYGGAGVSYGTLAEVIATISAADGSIGQIPQNHFYAVELIRVNGSESQ 130 Query: 61 KRFYFERVLQGDRFGNALAEIGTRNSAERKTRLSKD--GADYRINGRKFYATGALYADWV 118 KRF+FERVLQGDRFGNALAE+GT+ S +RKTRLS++ G YRI+GRKFYATGALYADWV Sbjct: 131 KRFFFERVLQGDRFGNALAELGTKTSHDRKTRLSRNAHGPGYRIDGRKFYATGALYADWV 190 Query: 119 PTSAIDDDGVQQLALVPRNAQGLSIVDDWSGFGQRTTGSGSAIFDNVRVDGGAVLGFQAS 178 PTS IDDDGVQQLA+VPR+A GL+I+DDWSGFGQRTTGSGSA+F+NV V AV+GF + Sbjct: 191 PTSVIDDDGVQQLAIVPRHAPGLTIIDDWSGFGQRTTGSGSAVFENVHVPADAVIGFATA 250 Query: 179 FDRPTTVGPLAQLLHAAIDLGIARA 203 F RPT +GP+AQ+ HAAIDLGIARA Sbjct: 251 FSRPTQIGPMAQIQHAAIDLGIARA 275 >gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 411 Score = 202 bits (513), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 136/206 (66%), Gaps = 4/206 (1%) Query: 2 RSGLWGISVPKEYGGAGVSYVTLAQVTAIIAEADGSLGQIPQNHFYAVEIIRVNGSDAQK 61 +SGLW I+VP+ +GG G S+ T+A+V +I+ AD S+GQIPQNHF + +I S Q+ Sbjct: 60 QSGLWAITVPRSHGGIGASWQTVAEVIRLISAADPSIGQIPQNHFGNLNLIARLASQEQQ 119 Query: 62 RFYFERVLQGDRFGNALAEIGTRNSAERKTRLSKDGA----DYRINGRKFYATGALYADW 117 R +F VL G R GNA E +N + +TR + D A Y +NG +FY+TGALYA W Sbjct: 120 RLFFAEVLDGARLGNAGPERNGKNVLDVRTRATLDRAAGDGSYLLNGTRFYSTGALYAHW 179 Query: 118 VPTSAIDDDGVQQLALVPRNAQGLSIVDDWSGFGQRTTGSGSAIFDNVRVDGGAVLGFQA 177 +P+ AIDDDG + R+A G+ ++DDWS FGQRTT SG+ +FDNVRV VL + Sbjct: 180 IPSRAIDDDGQPLVVYTRRDAPGVRVIDDWSSFGQRTTASGTVVFDNVRVPATQVLALKD 239 Query: 178 SFDRPTTVGPLAQLLHAAIDLGIARA 203 + +P +GP++QL+ AAID GIA A Sbjct: 240 ALQQPNNIGPVSQLIQAAIDAGIAHA 265 >gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurization flavin reductase [Herbaspirillum seropedicae SmR1] Length = 419 Score = 178 bits (452), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 130/202 (64%) Query: 2 RSGLWGISVPKEYGGAGVSYVTLAQVTAIIAEADGSLGQIPQNHFYAVEIIRVNGSDAQK 61 +SGLW I+VP+ +GGA VSY TLA+V AII+ AD SLGQI QNH V +R Q+ Sbjct: 72 QSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPSLGQITQNHLGFVAAVRTVSDPEQQ 131 Query: 62 RFYFERVLQGDRFGNALAEIGTRNSAERKTRLSKDGADYRINGRKFYATGALYADWVPTS 121 R +F L+G R+GNA +E G++ +A+ +TR G + G+KFY+TGAL A +VP Sbjct: 132 RRFFADFLRGVRWGNAFSESGSKRAADFETRFVDAGDHVIVTGKKFYSTGALLAHYVPIV 191 Query: 122 AIDDDGVQQLALVPRNAQGLSIVDDWSGFGQRTTGSGSAIFDNVRVDGGAVLGFQASFDR 181 A D++ + RNA GL+++DDWS FGQRTT SG+ I D V+V ++ + Sbjct: 192 ANDEENRTWYVVAERNAPGLTVIDDWSAFGQRTTLSGTVIIDQVKVPKTHLIPAYKGYLE 251 Query: 182 PTTVGPLAQLLHAAIDLGIARA 203 P+ G + Q++ AA+D+GIARA Sbjct: 252 PSADGAIFQIIQAAVDVGIARA 273 >gi|300313969|ref|YP_003778061.1| isovaleryl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 394 Score = 68.6 bits (166), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 23/215 (10%) Query: 4 GLWGISVPKEYGGAGVSYVTLAQVTAI--IAEADGSLGQIPQNHF-YAVEIIRVNGSDAQ 60 G+ GI+V +EYGGAG+ Y LA + A+ I+ A S+G H V I+ NG++ Q Sbjct: 55 GVLGITVSEEYGGAGLGY--LAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQ 112 Query: 61 KRFYFERVLQGDRFGN-ALAEIGT-RNSAERKTRLSKDGADYRINGRKFYATGALYADWV 118 KR Y R++ GD G A++E + K R K G Y +NG K + T AD + Sbjct: 113 KRKYLPRLISGDFIGALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVL 172 Query: 119 PTSAIDD--DGVQQLA--LVPRNAQGLSIVDDWSGFGQRTTGSGSAIFDNVRVDGGAVLG 174 A D G + + LV + +G S+ G R + +G +F + V VLG Sbjct: 173 VVYAKTDLEAGARGMTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLG 232 Query: 175 --------FQASFDRPTTV---GPLAQLLHAAIDL 198 + D +V GPL ++ A +D+ Sbjct: 233 GVGRGVNVLMSGLDFERSVLSGGPLG-IMQACMDV 266 >gi|300310260|ref|YP_003774352.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 382 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 11/180 (6%) Query: 4 GLWGISVPKEYGGAGVSYVTLAQVTAIIAEADGSLGQI--PQNHFYAVEIIRVNGSDAQK 61 G G+ VP+++GGAG+ Y++L IA DG+ I QN A I GS QK Sbjct: 47 GAMGMCVPEQWGGAGMDYMSLVLALEEIAAGDGATSTIVSVQNSL-ACGITEKYGSPTQK 105 Query: 62 RFYFERVLQGDRFGN-ALAEIGT-RNSAERKTRLSKDGADYRINGRKFYATGALYADWVP 119 + + + +G+ G L E T ++A +TR +DG D+ +NG K + T +A Sbjct: 106 EQWLKPLARGEMLGCFCLTEPHTGSDAAAIRTRAERDGDDFILNGTKQFITSGKHAGVAI 165 Query: 120 TSAIDD-----DGVQQLALVPRNAQGLSIVDDWSGFGQRTTGSGSAIFDNVRVDGGAVLG 174 A+ D G+ LVP + G + GQ + + + DN RV A+LG Sbjct: 166 VFAVTDRSAGKKGISCF-LVPCDTPGFVVGRSEEKMGQHASDTVQIMLDNCRVPATALLG 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 709,194 Number of extensions: 31017 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 5 Length of query: 209 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 128 Effective length of database: 1,236,335 Effective search space: 158250880 Effective search space used: 158250880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)