BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0375.p (571 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 501 e-143 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 446 e-126 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 329 5e-91 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 263 2e-71 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 261 1e-70 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 501 bits (1290), Expect = e-143, Method: Compositional matrix adjust. Identities = 278/577 (48%), Positives = 384/577 (66%), Gaps = 39/577 (6%) Query: 3 QLLDIRNLNVSFPGH----DAVKDLSFGIAAGETLALVGESGCGKSTTALSLLRLLPPSA 58 ++LD+ +L+V F DAV+DLSF + GETLA+VGESG GKS ++L+++RL+ Sbjct: 6 RVLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGG 65 Query: 59 Q--VSGNIVFEGR-----DLSALPEDEICALRGNAISMIFQEPMTSLNPVLTIGRQVVEA 111 SG++ F R DL+ + ++RG I+MIFQEPMTSLNPV T+G Q+ E+ Sbjct: 66 GKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAES 125 Query: 112 IRLHQPLSPQAAKARAIELLELVRIPEPQRRFNDYPHNLSGGQRQRVMIAMAVSCHPRLL 171 IRLHQ L AA+A A+ +LE+VRIPE +R +PH LSGG RQRVMIAMA+SC P LL Sbjct: 126 IRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLL 185 Query: 172 VADEPTTALDVTIQAQILELLGQLRRDLSMAVLLITHDLAVVEQWADRVAVMYGGRKVEE 231 +ADEPTTALDVTIQAQIL+L+ L++++ M V+ ITHD+ VV + ADRV VM G KVEE Sbjct: 186 IADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEE 245 Query: 232 ASSAILFDRPQHPYTRGLLGASLQMEQDYHYRDGRLPEIRTGIEDGERIFTLTERAHAQP 291 + LF P HPYT+ LL A RL +R G + R F + +A A+P Sbjct: 246 NAVNPLFAAPAHPYTQSLLAAV-----------PRLGSMR-GTDKPLR-FGIAPQAEARP 292 Query: 292 ------LSSLLPLDPDAKALLSLQDVHTHYRSRNSV-------VHAVKGVSFDIAAGESV 338 L + + + +L ++D+ T + ++ + VHAV+ VSFD+ AGE++ Sbjct: 293 DLIASELQAQAEIAAQRQPILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETL 352 Query: 339 GLVGESGCGKSTLSKTIVRLVDASAGKILLDGDDIAQLDSARLRPYRRRVQMIFQDPYAS 398 +VGESGCGKST ++++RLVD + GK+ G D+AQL + LR RR +Q IFQDP+AS Sbjct: 353 AIVGESGCGKSTTGRSLLRLVDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFAS 412 Query: 399 LNPRHTVAEILDAALVIHDVKDKTERRRRIEQIVDLVGLPQRALRSYPHQFSGGQRQRIG 458 L+PR TV + +++H +K+ + R++ ++ VGL + YPH+FSGGQRQRI Sbjct: 413 LDPRMTVGYSIMEPMLVHGMKEGAQ--ERVDALLTRVGLTPEHGQRYPHEFSGGQRQRIC 470 Query: 459 IARALVLKPALVICDEPVSALDVSVQAQILNLLVDLKREFGLSYLFISHDLSVVRYIADK 518 IARAL L P +VI DE VSALDVS+QAQI+NL++DL+ E G+S++FISHD++VV I+ + Sbjct: 471 IARALALNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHR 530 Query: 519 VLVMNGGRIVESGDHNSIWQAPQHDYTRSLIAAVPSA 555 V VM G+IVE G +I++ PQH YTR L+AAVP A Sbjct: 531 VAVMYLGQIVEIGPRRAIFENPQHPYTRKLMAAVPVA 567 Score = 187 bits (476), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/273 (39%), Positives = 163/273 (59%), Gaps = 15/273 (5%) Query: 305 LLSLQDVHTHYRSRNSVVHAVKGVSFDIAAGESVGLVGESGCGKSTLSKTIVRLVDASAG 364 +L + + + + V AV+ +SF + GE++ +VGESG GKS S I+RL++ G Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 365 KILLDGD-----------DIAQLDSARLRPYR-RRVQMIFQDPYASLNPRHTVAEILDAA 412 KI G D+AQ D+A +R R + MIFQ+P SLNP TV E + + Sbjct: 67 KIA-SGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAES 125 Query: 413 LVIHDVKDKTERRRRIEQIVDLVGLPQ--RALRSYPHQFSGGQRQRIGIARALVLKPALV 470 + +H + + +++++V +P+ R L +PHQ SGG RQR+ IA AL KP+L+ Sbjct: 126 IRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLL 185 Query: 471 ICDEPVSALDVSVQAQILNLLVDLKREFGLSYLFISHDLSVVRYIADKVLVMNGGRIVES 530 I DEP +ALDV++QAQIL L+ L++E + +FI+HD+ VV +AD+V+VM G VE Sbjct: 186 IADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEE 245 Query: 531 GDHNSIWQAPQHDYTRSLIAAVPSAAARRQVEE 563 N ++ AP H YT+SL+AAVP + R ++ Sbjct: 246 NAVNPLFAAPAHPYTQSLLAAVPRLGSMRGTDK 278 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust. Identities = 260/553 (47%), Positives = 350/553 (63%), Gaps = 45/553 (8%) Query: 4 LLDIRNLNVSFPGHDAVKDLSFGIAAGETLALVGESGCGKSTTALSLLRLLPPSAQVSGN 63 LL++ NL V F V +SF IA GE ALVGESG GK+ ++L++++L A+ G+ Sbjct: 5 LLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL-NQDARYEGS 63 Query: 64 IVFEGRDLSALPEDEICALRGNAISMIFQEPMTSLNPVLTIGRQVVEAIRLHQPLSPQAA 123 I+ +G+D+ A E ++ +RGN ++MIFQEPMT+LNP+ TIG Q+ E + H+ L+ + A Sbjct: 64 ILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDA 123 Query: 124 KARAIELLELVRIPEPQRRFNDYPHNLSGGQRQRVMIAMAVSCHPRLLVADEPTTALDVT 183 RA+ LLE IPEP RR YPH LSGGQRQR MIAMA++C P+LL+ADEPTTALDVT Sbjct: 124 ARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVT 183 Query: 184 IQAQILELLGQLRRDLSMAVLLITHDLAVVEQWADRVAVMYGGRKVEEASSAILFDRPQH 243 IQ QIL LL QL+R+ +MAVL+I+HDL +V +ADRV VM G+ VE AS A LF PQ Sbjct: 184 IQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQ 243 Query: 244 PYTRGLLGASLQMEQDYHYRDGRLPEIRTGIEDGERIFTLTERAHAQPLSSLLPLDPDAK 303 PYTR LL ++P + + DA Sbjct: 244 PYTRKLL-------------------------------------QSRPQRNAADVAADAP 266 Query: 304 ALLSLQDVHTHYRSRNS-----VVHAVKGVSFDIAAGESVGLVGESGCGKSTLSKTIVRL 358 +L + + Y + HAV GV + GE++G+VGESG GKSTL ++RL Sbjct: 267 VVLQAERLRCTYHIKQGWFAKRAFHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRL 326 Query: 359 VDAS-AGKILLDGDDIAQLDSARLRPYRRRVQMIFQDPYASLNPRHTVAEILDAALVIHD 417 AS AG I DG I++ LRP R R+Q++FQDP+ASL+PR TV +I+ L +H Sbjct: 327 SAASVAGSIRFDGVPISERPQRELRPLRSRMQVVFQDPFASLSPRRTVEQIVGEGLELHH 386 Query: 418 VKDKTERRRR-IEQIVDLVGLPQRALRSYPHQFSGGQRQRIGIARALVLKPALVICDEPV 476 E++R+ I ++ VGL L YPH+FSGGQRQRI IARALVL+P L++ DEP Sbjct: 387 PDRSAEQQRQAIVAALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPT 446 Query: 477 SALDVSVQAQILNLLVDLKREFGLSYLFISHDLSVVRYIADKVLVMNGGRIVESGDHNSI 536 SALDV+VQ Q+L LL +L+R GL+YLFI+HDL+VV+ +A +V+VM G++VESG + Sbjct: 447 SALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQV 506 Query: 537 WQAPQHDYTRSLI 549 Q PQ +YTR L+ Sbjct: 507 LQQPQQEYTRRLV 519 Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 143/234 (61%), Gaps = 5/234 (2%) Query: 325 VKGVSFDIAAGESVGLVGESGCGKSTLSKTIVRLVDAS--AGKILLDGDDIAQLDSARLR 382 V VSF IA GE LVGESG GK+ S +++L + G ILLDG D+ +++ Sbjct: 21 VDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYEGSILLDGQDVLAKSERQMQ 80 Query: 383 PYR-RRVQMIFQDPYASLNPRHTVAEILDAALVIHDVKDKTERRRRIEQIVDLVGLPQRA 441 R V MIFQ+P +LNP T+ + L+ H+ + + RR +++ G+P+ A Sbjct: 81 QVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTGIPEPA 140 Query: 442 LR--SYPHQFSGGQRQRIGIARALVLKPALVICDEPVSALDVSVQAQILNLLVDLKREFG 499 R SYPH+ SGGQRQR IA AL KP L+I DEP +ALDV++Q QIL LL L+RE Sbjct: 141 RRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQILALLNQLQREEN 200 Query: 500 LSYLFISHDLSVVRYIADKVLVMNGGRIVESGDHNSIWQAPQHDYTRSLIAAVP 553 ++ L ISHDL++VR+ AD+V VM G++VES ++ PQ YTR L+ + P Sbjct: 201 MAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQPYTRKLLQSRP 254 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 329 bits (843), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 200/561 (35%), Positives = 309/561 (55%), Gaps = 37/561 (6%) Query: 4 LLDIRNLNVSFPGHDA-----VKDLSFGIAAGETLALVGESGCGKSTTALSLLRLLPPSA 58 L++++ L V+ D VK+++F +A GE LAL+GESG GK+T ALSLL Sbjct: 28 LVEVQGLRVNARKEDGSQVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGC 87 Query: 59 QVSGNIVFEG-RDLSALPEDEICALRGNAISMIFQEPMTSLNPVLTIGRQVVEAIRLHQP 117 ++G V G R + + E + A+RG+ ++ I Q + NP T+ QV+E+ H Sbjct: 88 HIAGGQVRIGERQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGV 147 Query: 118 LSPQAAKARAIELLELVRIPEPQRRFNDYPHNLSGGQRQRVMIAMAVSCHPRLLVADEPT 177 + +A +A+EL + +P P + YPH +SGGQ QRVM AMA+ P L++ DEPT Sbjct: 148 MDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPT 207 Query: 178 TALDVTIQAQILELLGQLRRDLSMAVLLITHDLAVVEQWADRVAVMYGGRKVEEASSAIL 237 TALDVT Q ++L + ++L + ++HDLAVV Q ADR+ V+ G E S++ + Sbjct: 208 TALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQV 267 Query: 238 FDRPQHPYTRGLLGASLQMEQDYHYRDGRLPEIRTGIEDGERIFTLTERAHAQPLSSLLP 297 P YT+ LL A+ R+ L E L + LP Sbjct: 268 LHAPADSYTQCLLAAA---------------------SPAARVVQLREI-----LPATLP 301 Query: 298 LDPDAKALLSLQDVHTHYRSRNSV----VHAVKGVSFDIAAGESVGLVGESGCGKSTLSK 353 + A LL + + Y + + + V + ++ I G +VG++GESG GK+TL++ Sbjct: 302 AEARAP-LLRISGLVAGYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLAR 360 Query: 354 TIVRLVDASAGKILLDGDDIAQLDSARLRPYRRRVQMIFQDPYASLNPRHTVAEILDAAL 413 + ++ + G I LDG+ ++ R R RRVQ++FQ+ +LNP H++ IL+ L Sbjct: 361 AVAGMIAPARGSIQLDGETLSPTLEGRTREQFRRVQIVFQNADTALNPSHSIGRILNRPL 420 Query: 414 VIHDVKDKTERRRRIEQIVDLVGLPQRALRSYPHQFSGGQRQRIGIARALVLKPALVICD 473 + RRR +++DLV LP + P + SGGQ+QR+ +ARAL KP L++CD Sbjct: 421 SFYHGLKGEAMRRRTAELLDLVQLPATVIDRLPAELSGGQKQRVNLARALAAKPDLILCD 480 Query: 474 EPVSALDVSVQAQILNLLVDLKREFGLSYLFISHDLSVVRYIADKVLVMNGGRIVESGDH 533 E SALD V A IL LL +L+RE +SY+FISHD+S VR I D ++V+ GR+V + Sbjct: 481 EVTSALDTVVAAAILELLAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRMVANRPR 540 Query: 534 NSIWQAPQHDYTRSLIAAVPS 554 ++ P H Y+ L+++VP+ Sbjct: 541 EAMMAPPYHPYSHLLLSSVPA 561 Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 139/249 (55%), Gaps = 6/249 (2%) Query: 12 VSFPGHDAVKDLSFGIAAGETLALVGESGCGKSTTALSLLRLLPPSAQVSGNIVFEGRDL 71 + PG + D++ I G T+ ++GESG GK+T A ++ ++ P+ G+I +G L Sbjct: 324 LGLPGVRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPA---RGSIQLDGETL 380 Query: 72 SALPEDEICALRGNAISMIFQEPMTSLNPVLTIGRQVVEAIRLHQPLSPQAAKARAIELL 131 S E + + ++FQ T+LNP +IGR + + + L +A + R ELL Sbjct: 381 SPTLEGRTRE-QFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMRRRTAELL 439 Query: 132 ELVRIPEPQRRFNDYPHNLSGGQRQRVMIAMAVSCHPRLLVADEPTTALDVTIQAQILEL 191 +LV++P + P LSGGQ+QRV +A A++ P L++ DE T+ALD + A ILEL Sbjct: 440 DLVQLPATV--IDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAILEL 497 Query: 192 LGQLRRDLSMAVLLITHDLAVVEQWADRVAVMYGGRKVEEASSAILFDRPQHPYTRGLLG 251 L +LRR+L ++ + I+HD++ V D + V+Y GR V + P HPY+ LL Sbjct: 498 LAELRRELQVSYMFISHDISTVRAICDDIVVLYAGRMVANRPREAMMAPPYHPYSHLLLS 557 Query: 252 ASLQMEQDY 260 + M+Q + Sbjct: 558 SVPAMQQGW 566 Score = 145 bits (367), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 150/269 (55%), Gaps = 8/269 (2%) Query: 303 KALLSLQDVHTHYRSRN-SVVHAVKGVSFDIAAGESVGLVGESGCGKSTLSKTIVRLVDA 361 + L+ +Q + + R + S V VK V+F +A GE + L+GESG GK+T++ +++ A Sbjct: 26 RPLVEVQGLRVNARKEDGSQVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARA 85 Query: 362 ----SAGKILLDGDDIAQLDSARLRPYR-RRVQMIFQDPYASLNPRHTVAEILDAALVIH 416 + G++ + I Q+D L R V I Q A+ NP T+ + + + + H Sbjct: 86 GCHIAGGQVRIGERQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQH 145 Query: 417 DVKDKTERRRRIEQIVDLVGLPQ--RALRSYPHQFSGGQRQRIGIARALVLKPALVICDE 474 V DK R+ ++ + LP + YPHQ SGGQ QR+ A ALV P LVI DE Sbjct: 146 GVMDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDE 205 Query: 475 PVSALDVSVQAQILNLLVDLKREFGLSYLFISHDLSVVRYIADKVLVMNGGRIVESGDHN 534 P +ALDV+ Q ++L ++ +E G + +++SHDL+VV +AD+++V+ G + E+G + Sbjct: 206 PTTALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTS 265 Query: 535 SIWQAPQHDYTRSLIAAVPSAAARRQVEE 563 + AP YT+ L+AA AA Q+ E Sbjct: 266 QVLHAPADSYTQCLLAAASPAARVVQLRE 294 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 263 bits (673), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 134/258 (51%), Positives = 180/258 (69%), Gaps = 6/258 (2%) Query: 297 PLDPDAKALLSLQDVHTHYRS---RNSVVHAVKGVSFDIAAGESVGLVGESGCGKSTLSK 353 PLD A L +L V+ R + AV VS + GE++GLVGESGCGKSTL+K Sbjct: 10 PLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAK 69 Query: 354 TIVRLVDASAGKILLDGDDIAQLDSARLRPYRRRVQMIFQDPYASLNPRHTVAEILDAAL 413 ++ L+ ++G +L++G ++ D + + R +Q IFQDPY+SLNPR TVAEI+ L Sbjct: 70 MLLGLLPPTSGNVLINGQEV---DPTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPL 126 Query: 414 VIHDVKDKTERRRRIEQIVDLVGLPQRALRSYPHQFSGGQRQRIGIARALVLKPALVICD 473 +H + + ER R+++ I+DLVG+P+R YP+Q SGGQRQR+ IARAL+L+P ++ICD Sbjct: 127 KLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICD 186 Query: 474 EPVSALDVSVQAQILNLLVDLKREFGLSYLFISHDLSVVRYIADKVLVMNGGRIVESGDH 533 EP SALDVSVQAQILNLL+DLK EFGL+YLFISHDL VV ++ D+V VMN G IVE Sbjct: 187 EPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSR 246 Query: 534 NSIWQAPQHDYTRSLIAA 551 ++ PQH YTR L+A+ Sbjct: 247 EQLFSEPQHLYTRMLLAS 264 Score = 185 bits (469), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 116/242 (47%), Positives = 150/242 (61%), Gaps = 12/242 (4%) Query: 15 PGH-DAVKDLSFGIAAGETLALVGESGCGKSTTALSLLRLLPPSAQVSGNIVFEGRDLSA 73 PG AV D+S + GETL LVGESGCGKST A LL LLPP+ SGN++ G+++ Sbjct: 35 PGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLPPT---SGNVLINGQEVD- 90 Query: 74 LPEDEICALRGNAISMIFQEPMTSLNPVLTIGRQVVEAIRLHQPLSPQAAKARAI-ELLE 132 P + R I IFQ+P +SLNP T+ V ++LH + A + R + ++L+ Sbjct: 91 -PTERKAHAR--HIQPIFQDPYSSLNPRKTVAEIVGLPLKLHG-IGNAAERNRQVKDILD 146 Query: 133 LVRIPEPQRRFNDYPHNLSGGQRQRVMIAMAVSCHPRLLVADEPTTALDVTIQAQILELL 192 LV +PE R YP+ LSGGQRQRV IA A+ P +L+ DEPT+ALDV++QAQIL LL Sbjct: 147 LVGMPE--RTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALDVSVQAQILNLL 204 Query: 193 GQLRRDLSMAVLLITHDLAVVEQWADRVAVMYGGRKVEEASSAILFDRPQHPYTRGLLGA 252 L+ + + L I+HDL VVE DRVAVM G VE S LF PQH YTR LL + Sbjct: 205 LDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEPQHLYTRMLLAS 264 Query: 253 SL 254 +L Sbjct: 265 AL 266 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 261 bits (667), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 138/258 (53%), Positives = 180/258 (69%), Gaps = 7/258 (2%) Query: 1 MSQLLDIRNLNVSFPGHD----AVKDLSFGIAAGETLALVGESGCGKSTTALSLLRLLPP 56 MS LLD++NL V P + AV+ + F + GE L LVGESGCGKS T+L+L+ LLP Sbjct: 1 MSVLLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPR 60 Query: 57 SAQVSGN-IVFEGRDLSALPEDEICALRGNAISMIFQEPMTSLNPVLTIGRQVVEAIRLH 115 AQ S + I+F+G DL +P+ ++ LRG ++MIFQEPMTSLNP T+G Q+ EA+ L Sbjct: 61 KAQCSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAM-LQ 119 Query: 116 QP-LSPQAAKARAIELLELVRIPEPQRRFNDYPHNLSGGQRQRVMIAMAVSCHPRLLVAD 174 QP +S A+ RA+ LL I + R YPH LSGG RQRVMIAM++ C+P L++AD Sbjct: 120 QPGVSRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIAD 179 Query: 175 EPTTALDVTIQAQILELLGQLRRDLSMAVLLITHDLAVVEQWADRVAVMYGGRKVEEASS 234 EPTTALDVTIQAQIL ++ +L+++ AV+ ITHDL VV + ADRVAVMY G+ VE Sbjct: 180 EPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDV 239 Query: 235 AILFDRPQHPYTRGLLGA 252 A LF +P+HPYT+GLL Sbjct: 240 AQLFAQPRHPYTQGLLNC 257 Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/256 (41%), Positives = 158/256 (61%), Gaps = 7/256 (2%) Query: 305 LLSLQDVHTHYRSRNSVVHAVKGVSFDIAAGESVGLVGESGCGKSTLSKTIV----RLVD 360 LL ++++ + N ++HAV+G+ F + GE + LVGESGCGKS S ++ R Sbjct: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 Query: 361 ASAGKILLDGDDIAQLDSARLRPYR-RRVQMIFQDPYASLNPRHTVAEILDAALVIHDVK 419 SA IL DG D+ + +L R +R+ MIFQ+P SLNP +T+ L A++ Sbjct: 64 CSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123 Query: 420 DKTERRRRIEQIVDLVGLP--QRALRSYPHQFSGGQRQRIGIARALVLKPALVICDEPVS 477 + E R R ++ G+ + LR YPHQ SGG RQR+ IA +L+ P L+I DEP + Sbjct: 124 SRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPTT 183 Query: 478 ALDVSVQAQILNLLVDLKREFGLSYLFISHDLSVVRYIADKVLVMNGGRIVESGDHNSIW 537 ALDV++QAQIL ++ +L++EFG + +FI+HDL VV IAD+V VM G++VE+ D ++ Sbjct: 184 ALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLF 243 Query: 538 QAPQHDYTRSLIAAVP 553 P+H YT+ L+ +P Sbjct: 244 AQPRHPYTQGLLNCIP 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,706,112 Number of extensions: 69793 Number of successful extensions: 1016 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 657 Number of HSP's successfully gapped: 265 Length of query: 571 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 481 Effective length of database: 1,193,720 Effective search space: 574179320 Effective search space used: 574179320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)