BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0374.p (277 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 437 e-124 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 269 2e-73 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 256 1e-69 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 202 2e-53 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 152 4e-38 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 437 bits (1124), Expect = e-124, Method: Compositional matrix adjust. Identities = 203/265 (76%), Positives = 233/265 (87%) Query: 13 FTGLLLASVATTFSMTAAAQEKTLKVGVTSGPHAQIFEVVKRVFERSNPGYKIQIVEFND 72 + L+++ +A+ AA ++ ++VGVTSGPHAQIFE +RVFER NPGYK++I+EFND Sbjct: 12 LSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEFND 71 Query: 73 YIQPDAALDAGELDANSFQHRPFFNAQIKARGYKLFGTGRTFIGPMAIYSKKYRSLSDIP 132 YIQP+AALDAGELDANS+QHRPF NAQIK RGYKL+ G+T IGPMAIYS+KYR L D+P Sbjct: 72 YIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLEDVP 131 Query: 133 AGAKIGIPNDPANESRVLLLLQKHGAIKLRTGIDPLTGINATPIDIVDNPKKWKFIEIDA 192 GA+IGIPNDPANESRVLLLLQKHG IKLR GIDPLTG NATPIDI +NPKKWKF+EIDA Sbjct: 132 VGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVEIDA 191 Query: 193 AQLPRTLDDLDASAVNADYAAKAGLHPVRDSLVVENGDSPYACLIAVREKDKDQVWLPKL 252 AQLPRTLDDLDASAVNADYAAKAGL+P RDSLVVE+GDSPYACLIAVREKD+ Q WL KL Sbjct: 192 AQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWLGKL 251 Query: 253 VKAYQSDEVKKFIDAEFKGGILAAW 277 V+AYQS EVK++I+ EFKGGILAAW Sbjct: 252 VQAYQSPEVKRYIETEFKGGILAAW 276 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 269 bits (687), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/271 (52%), Positives = 192/271 (70%), Gaps = 9/271 (3%) Query: 7 RLLTAGFTGLLLASVATTFSMTAAAQEKTLKVGVTSGPHAQIFEVVKRVFERSNPGYKIQ 66 R L GL LA A S A AQ++ +K+GVT+GPHA+I E VK++ E+ G +++ Sbjct: 4 RQLIQFIAGLGLA--AGLVSAPAFAQDQ-IKMGVTAGPHAEIMEQVKKLLEKD--GVQMK 58 Query: 67 IVEFNDYIQPDAALDAGELDANSFQHRPFFNAQIKARGYKLFGTGRTFIGPMAIYSKKYR 126 ++EF DYIQP+AAL AG+LDANS+QH+P+ +AQIK RGYK G T PM +YSKK + Sbjct: 59 VIEFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIK 118 Query: 127 SLSDIPAGAKIGIPNDPANESRVLLLLQKHGAIKLRTGIDPLTGINATPIDIVDNPKKWK 186 SL+D+ GA++G+PNDP N R LL+LQ G IKL+ G+ ATP+DIV+NPKK K Sbjct: 119 SLNDLKQGARVGVPNDPTNGGRALLVLQAKGVIKLKAD----AGLKATPLDIVENPKKIK 174 Query: 187 FIEIDAAQLPRTLDDLDASAVNADYAAKAGLHPVRDSLVVENGDSPYACLIAVREKDKDQ 246 +E+DAAQLPR+LDD DA+ +N +YA AGL P +D++ VE PYA +IAVR DKD+ Sbjct: 175 IVELDAAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDK 234 Query: 247 VWLPKLVKAYQSDEVKKFIDAEFKGGILAAW 277 W+ KLVKAY S EVKKF+ ++KG ++ +W Sbjct: 235 PWVAKLVKAYHSPEVKKFVLEKYKGSVITSW 265 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 256 bits (654), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 132/258 (51%), Positives = 188/258 (72%), Gaps = 3/258 (1%) Query: 20 SVATTFSMTAAAQEKTLKVGVTSGPHAQIFEVVKRVFERSNPGYKIQIVEFNDYIQPDAA 79 S+A + A ++ +KVG++ G IF+VVK+V R G +IQ V F+DY+QP+AA Sbjct: 20 SLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARD--GLEIQTVVFSDYLQPNAA 77 Query: 80 LDAGELDANSFQHRPFFNAQIKARGYKLFGTGRTFIGPMAIYSKKYRSLSDIPAGAKIGI 139 L AG+LDAN+FQHRP+ +QI ARGY++ G T P+ IYS+K+RS+ +P GA IGI Sbjct: 78 LAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQLPQGAAIGI 137 Query: 140 PNDPANESRVLLLLQKHGAIKLRTGIDPLTGINATPIDIVDNPKKWKFIEIDAAQLPRTL 199 NDP+N +R LLLLQK G I+L+ G+ G+NATP+D+++NP+K K +E+DAAQLPR+L Sbjct: 138 QNDPSNGNRALLLLQKAGLIRLKPGVGE-NGVNATPLDVIENPRKLKLVELDAAQLPRSL 196 Query: 200 DDLDASAVNADYAAKAGLHPVRDSLVVENGDSPYACLIAVREKDKDQVWLPKLVKAYQSD 259 DDL A+++N DYA KAGL +D++ VE+ YA +IA R +DKD+ W+ KLV+AY S+ Sbjct: 197 DDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKLVQAYHSE 256 Query: 260 EVKKFIDAEFKGGILAAW 277 EV+KFI+ EFKG ++ A+ Sbjct: 257 EVRKFIETEFKGSLVPAF 274 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 202 bits (515), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/262 (41%), Positives = 161/262 (61%), Gaps = 8/262 (3%) Query: 17 LLASVATTFSMTAAAQEKTLKVGVTSGPHAQIFEVVKRVFERSNPGYKIQIVEFNDYIQP 76 L A A FS+ A A +K L + T PHA+I E +K + G +Q+ F DY+QP Sbjct: 9 LFAGAALAFSVGAHAADK-LVIAATPVPHAEILEHIKPALAKE--GIDLQVKVFTDYVQP 65 Query: 77 DAALDAGELDANSFQHRPFFNAQIKARGYKL-FGTGRTFIGPMAIYSKKYRSLSDIPAGA 135 A + ++D N F H+P+ + K+ + + + P A YS+KY+ ++DIP GA Sbjct: 66 AAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIADIPNGA 125 Query: 136 KIGIPNDPANESRVLLLLQKHGAIKLRTGIDPLTGINATPIDIVDNPKKWKFIEIDAAQL 195 I IPNDP+N R LLLL ++G IKL+ T I+AT DIV+NPKK KF ++AA L Sbjct: 126 TIAIPNDPSNSGRALLLLARNGLIKLKDN----TNISATQKDIVENPKKLKFRALEAATL 181 Query: 196 PRTLDDLDASAVNADYAAKAGLHPVRDSLVVENGDSPYACLIAVREKDKDQVWLPKLVKA 255 PR L+ +D + +N +YA +A L+PV+DSL +E+ +SPYA L+ RE +KD + KL A Sbjct: 182 PRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAAA 241 Query: 256 YQSDEVKKFIDAEFKGGILAAW 277 S +VKKFI+ +++G I+ A+ Sbjct: 242 LNSPDVKKFIEEKYQGAIVPAF 263 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 152 bits (383), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 113/191 (59%), Gaps = 7/191 (3%) Query: 13 FTGLLLASVATTFSMTAAAQEKTLKVGVTSGPHAQIFEVVKRVFERSNPGYKIQIVEFND 72 F+ L+ S+ T S+ AA L++GV G + V + E G +Q+VEF D Sbjct: 3 FSHLVFLSL-TVLSLQAAQAADKLRIGVVPGAYGDSVAVAAK--EAKRQGIDVQVVEFTD 59 Query: 73 YIQPDAALDAGELDANSFQHRPFFNAQIKARGYKLFGTGRTFIGPMAIYSKKYRSLSDIP 132 + P+ ALDAG+LD N FQH+PF + I+ GYKL G + + +YS KY+SL+ +P Sbjct: 60 WTTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALP 119 Query: 133 AGAKIGIPNDPANESRVLLLLQKHGAIKLRTGIDPLTGINATPIDIVDNPKKWKFIEIDA 192 GAK+GI NDP N+ R LLLLQ G IKL+ + L I+ DI+DNP+K F+E++ Sbjct: 120 QGAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSID----DIIDNPRKLSFVEVEG 175 Query: 193 AQLPRTLDDLD 203 QL R D+D Sbjct: 176 PQLVRITPDVD 186 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 807,647 Number of extensions: 33011 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 5 Length of query: 277 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 193 Effective length of database: 1,222,130 Effective search space: 235871090 Effective search space used: 235871090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)