BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0372.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 481 e-137 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 335 4e-93 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 209 2e-55 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 189 3e-49 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 168 5e-43 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 481 bits (1238), Expect = e-137, Method: Compositional matrix adjust. Identities = 242/274 (88%), Positives = 252/274 (91%), Gaps = 8/274 (2%) Query: 27 PLLQVDRVGLQYRSATAVVQATHDVSFDVYPADRFVLLGPSGCGKSSLLKAVAGFLKPAA 86 PLLQVDRV LQYRSATAVVQATH+VSFDVYPADRFVLLGPSGCGKSSLLK+VAGFL PAA Sbjct: 19 PLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 Query: 87 GEIRLDGAAIHQPGPDRIVVFQEFDQLPPWKTVKQNVMFPLLASRTLGKREAAERALHYL 146 GEIRLDG +HQPGPDRIVVFQEFDQLPPWKTV QNVMFPLLASRTLGKR+AAERA HYL Sbjct: 79 GEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHYL 138 Query: 147 DKVGLGKFADAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLI 206 DKVGL +FADAYPHTLSGGMKARVAIARALAMQPK+LLMDEPFAALDALTRRKMQEELL Sbjct: 139 DKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 Query: 207 LWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLQSLGGVGFQETAR 266 LW+EVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDL SLGGVGFQ+TA+ Sbjct: 199 LWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQ 258 Query: 267 RIHRLLFDERSGHPEPAH------VNFKDVRFSY 294 RIHRLLFDE G P A +NF DVRFSY Sbjct: 259 RIHRLLFDE--GGPSDAASAAAPTLNFSDVRFSY 290 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 335 bits (858), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 160/247 (64%), Positives = 198/247 (80%), Gaps = 2/247 (0%) Query: 27 PLLQVDRVGLQYRSATAVVQATHDVSFDVYPADRFVLLGPSGCGKSSLLKAVAGFLKPAA 86 PLL++DRV LQY++ ++V AT VSF+V+P DR++LLGPSGCGKS+LLKA+ G+L+P + Sbjct: 16 PLLEIDRVTLQYKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 Query: 87 GEIRLDGAAIHQPGPDRIVVFQEFDQLPPWKTVKQNVMFPLLASRTLGKREAAERALHYL 146 G IRL G +H+PGPDR++VFQEFDQL PWKTV+QNV F L AS L R AAERA +Y+ Sbjct: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAERAEYYI 135 Query: 147 DKVGLGKFADAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLI 206 KVGL KF D+YPH LSGGMK RV+IAR +AM+P +LLMDEPFAALDALTRRKMQ+ELL Sbjct: 136 SKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 Query: 207 LWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLQSLGGVGFQETAR 266 LW++ +FT+LFVTHSIEEA+ VG RILLL+PHPG+VRAE+NS D LG E Sbjct: 196 LWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNS--IDPSQLGTAAQAELET 253 Query: 267 RIHRLLF 273 RI+ +LF Sbjct: 254 RINDMLF 260 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 209 bits (532), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/254 (44%), Positives = 161/254 (63%), Gaps = 2/254 (0%) Query: 26 TPLLQVDRVGLQYRSATAVVQATHDVSFDVYPADRFVLLGPSGCGKSSLLKAVAGFLKPA 85 +P +++ V +++ V A D++ D+ LLGPSGCGKS+LL A+AGF P+ Sbjct: 7 SPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPS 66 Query: 86 AGEIRLDGAAIHQPGPDRIVVFQEFDQLPPWKTVKQNVMFPLLASRTLGKREAAERALHY 145 +G+I D + +PGPDR +VFQE+ L PW TV+QNV F L T K E +R Sbjct: 67 SGQILTDDKVVSEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGT-PKAEIHQRVTQL 124 Query: 146 LDKVGLGKFADAYPHTLSGGMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELL 205 LDK+GL F +P LSGGM+ RVAIAR LA+ I+LMDEPF ALDALTRR +Q+ELL Sbjct: 125 LDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELL 184 Query: 206 ILWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLQSLGGVGFQETA 265 +W+E R T++FVTHSIEEA+ + +RI++++ PG V+ ++ + L+ F Sbjct: 185 RIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALK 244 Query: 266 RRIHRLLFDERSGH 279 R + +L+ +E+ H Sbjct: 245 RELGQLVMEEQQRH 258 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 189 bits (479), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 102/204 (50%), Positives = 132/204 (64%), Gaps = 2/204 (0%) Query: 45 VQATHDVSFDVYPADRFVLLGPSGCGKSSLLKAVAGFLKPAAGEIRLDGAAIHQPGPDRI 104 V A VS D+ V LG SGCGKS+LL A+AGFL + G I LDG + PG +R Sbjct: 19 VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERG 78 Query: 105 VVFQEFDQLPPWKTVKQNVMFPLLASRTLGKREAAERALHYLDKVGLGKFADAYPHTLSG 164 VVFQ+ D L PWK+V+ NV L + + K ++ ERA L VGL FA A P+ LSG Sbjct: 79 VVFQK-DSLLPWKSVQDNVALGLKFA-GVSKSDSRERAQELLRLVGLQDFARAAPYELSG 136 Query: 165 GMKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLILWEEVRFTLLFVTHSIEE 224 GM+ RV +ARALA PKILLMDEPF ALD++TR +MQE L+ +W + F+THSIEE Sbjct: 137 GMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEE 196 Query: 225 ALVVGNRILLLSPHPGRVRAEINS 248 AL +G ++++SP PGR+ A + Sbjct: 197 ALFLGTEVIVMSPRPGRIVARFET 220 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 168 bits (426), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 125/194 (64%), Gaps = 2/194 (1%) Query: 54 DVYPADRFVLLGPSGCGKSSLLKAVAGFLKPAAGEIRLDGAAIHQPGPDRIVVFQEFDQL 113 ++ + L+GPSGCGKS+LL AG KP++G + DG I P P+R ++FQE + L Sbjct: 24 EIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMFQE-NAL 82 Query: 114 PPWKTVKQNVMFPLLASRTLGKREAAERALHYLDKVGLGKFADAYPHTLSGGMKARVAIA 173 PW T++QNV L +++ K++AAE+A +L+ V L F YPH +SGGM+ R A+A Sbjct: 83 YPWLTLQQNVALAL-EFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQRAALA 141 Query: 174 RALAMQPKILLMDEPFAALDALTRRKMQEELLILWEEVRFTLLFVTHSIEEALVVGNRIL 233 RA QPK LL+DEPF ALDALTR +Q+ L L + T++ VTH ++EAL + +RI Sbjct: 142 RAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLADRIF 201 Query: 234 LLSPHPGRVRAEIN 247 + SP P +V E N Sbjct: 202 VFSPRPAKVLKEFN 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 980,359 Number of extensions: 40760 Number of successful extensions: 477 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 345 Number of HSP's successfully gapped: 127 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)