BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0371.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   333   5e-93
gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   123   1e-29

>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  333 bits (854), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 158/188 (84%), Positives = 170/188 (90%)

Query: 1   VQSRVLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELA 60
           VQSRVLQLASAK WGDAQYN+LDKIS+AVPHPDA AAII+GGTEI+ HFGNPPFQ+QELA
Sbjct: 155 VQSRVLQLASAKLWGDAQYNRLDKISIAVPHPDATAAIISGGTEITGHFGNPPFQEQELA 214

Query: 61  GNPKAHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAA 120
           GNP AHIVL SY VLGGPSSATVLYATEKFRKDNPKTY+AFLDAL+E A FI ANPDKAA
Sbjct: 215 GNPNAHIVLKSYDVLGGPSSATVLYATEKFRKDNPKTYRAFLDALEETASFIRANPDKAA 274

Query: 121 DTYIRVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFD 180
           D Y++V+    DR LLL+IIKNPEVQFKIAPQNTY LAEFMHRVGAIKNKPASVKDYFFD
Sbjct: 275 DIYLKVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFD 334

Query: 181 DAHINGGS 188
           D H+ GGS
Sbjct: 335 DPHVQGGS 342


>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  123 bits (308), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 105/174 (60%), Gaps = 2/174 (1%)

Query: 5   VLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELAGNPK 64
           +LQ+A+AK +G   Y KLD ++V++ HP+A A++++G TEI+AHF +PPF  QE A  P 
Sbjct: 160 LLQMAAAKTFGIENYAKLDPLTVSLSHPEAMASLVSGKTEITAHFTSPPFSYQE-AKAPG 218

Query: 65  AHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAADTYI 124
              VLNS  VLG   +  V++A + F   NPK  +AF+ A +EA  +IA N   AA+ ++
Sbjct: 219 ITRVLNSTDVLGH-ITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFL 277

Query: 125 RVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYF 178
           RVS  K+ +  + +++ +P  +F   P +      FM + G IK KPA   + F
Sbjct: 278 RVSKLKLPQEEVEQMLADPGTEFTSTPVDIMQYVVFMSKAGTIKTKPAVWHEMF 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 588,684
Number of extensions: 23178
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)