BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0361.p
         (444 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspi...   571   e-164
gi|300310511|ref|YP_003774603.1| tRNA and rRNA cytosine-C5-methy...   100   2e-22

>gi|300309418|ref|YP_003773510.1| RNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 424

 Score =  571 bits (1471), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/416 (73%), Positives = 342/416 (82%), Gaps = 10/416 (2%)

Query: 28  GTALPQALARQFARSDMTPQARGAIQDLSYLSMRRLGMADGVLALLADKPPQPEILHGLL 87
           G ALPQALA+ F+RSD    ARGAIQDLSY +MR LG+ + +L LLA+KPPQPE+LHGLL
Sbjct: 18  GHALPQALAQIFSRSDAPAPARGAIQDLSYRAMRSLGLTESLLGLLANKPPQPEVLHGLL 77

Query: 88  ACALSLLLDEENPAYDAFTVVNQAVEAAAADAEMSHAKGVVNAILRRFLRERATLLPQVE 147
             AL+LL++EE   YD+FTVV+QAV+AAA   EMS AKGVVNAILRR LRERATL+PQ  
Sbjct: 78  VTALALLVNEEESGYDSFTVVDQAVQAAAISPEMSFAKGVVNAILRRLLRERATLMPQAT 137

Query: 148 KTPPGAWNYPTWWIDRLKGAYPAQWQDILRSGNAAPPLTLRVNRRKSNVPDYLHLLALNG 207
           KTPPG WNYPTWWIDRLK AYP QWQ IL +GN APPLTLRVNRR++ V  YL  L   G
Sbjct: 138 KTPPGTWNYPTWWIDRLKAAYPEQWQAILHAGNQAPPLTLRVNRRRTTVAQYLDTLQQAG 197

Query: 208 IGARQVGADAVRLDKPLPVSQIPGFADGLASVQDAAAQMAAPLLDVQDGMRVLDACAAPG 267
           + ARQVG  AVRL +P+PV Q+PGFA+G+ SVQDAAAQ+AAPLLDV DGMRVLDACAAPG
Sbjct: 198 MAARQVGPAAVRLHRPVPVQQLPGFAEGVVSVQDAAAQLAAPLLDVADGMRVLDACAAPG 257

Query: 268 GKTGHLLECAELDLVALDHDPKRLRRIEENLQRLQLKAQLLAGDARDSQDWWDGKQFDRI 327
           GKTGHLLE A+LDL ALDHD +RL+RI ENL RLQLKA+L  GDAR + DWWDG+ FDRI
Sbjct: 258 GKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQLKARLTTGDAR-ADDWWDGQPFDRI 316

Query: 328 LADVPCTASGIVRRHPDIRWLRRKSDTAQLTTLSAQILDNLWQMLKPGGKLLLVTCSLWP 387
           LADVPCTASGIVRRHPDIRWLRRK+DTAQL TLS QILD LWQML+P GKLLLVTCSLWP
Sbjct: 317 LADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWP 376

Query: 388 QESEEQAAAFAHRHQGSEGNSDHRAVRLPAPGQMLPTASAETDHDGLFYALFQKTG 443
           QESE+QA AFA +H          A+RLPAPGQ+LPTAS   DHDGLFYALFQK G
Sbjct: 377 QESEQQAVAFAQKHN---------AIRLPAPGQLLPTASETADHDGLFYALFQKPG 423


>gi|300310511|ref|YP_003774603.1| tRNA and rRNA
           cytosine-C5-methylase [Herbaspirillum seropedicae SmR1]
          Length = 419

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 121/255 (47%), Gaps = 9/255 (3%)

Query: 155 NYPTWWIDRLKGAY-PAQWQDILRSGNAAPPLTLRVNRRKSNVPDYLHLLALNGIGARQV 213
           N P W  D+L      A   ++  + N   PL LRVN  K++    +  LA   +     
Sbjct: 119 NLPPWLWDKLVARMGEAATLELAEAMNRPAPLDLRVNALKADRDTVIAELAKAPVACEPT 178

Query: 214 GAD--AVRLDKPLPVSQIPGFADGLASVQDAAAQMAAPLLDVQDGMRVLDACAAPGGKT- 270
                 +R+ K   +  +P F DG   VQD  +Q+ A ++  + G  V+D CA  GGKT 
Sbjct: 179 PYSPLGLRVLKKPALQNLPLFKDGAIEVQDEGSQLLAQIVGAKRGEMVVDFCAGAGGKTL 238

Query: 271 --GHLLECAELDLVALDHDPKRLRRIEENLQRLQLKAQ--LLAGDARDSQDWWDGKQFDR 326
             G L+      L A D   KRL +++  L R  L     ++     D++      + DR
Sbjct: 239 ALGALMRNTG-RLYAFDVSEKRLAKLKPRLARSGLSNVHPVVIAHENDAKVKRLAGKLDR 297

Query: 327 ILADVPCTASGIVRRHPDIRWLRRKSDTAQLTTLSAQILDNLWQMLKPGGKLLLVTCSLW 386
           +L D PC+  G +RR+PD++W +     A++    + IL +  ++++ GG+L+  TCS  
Sbjct: 298 VLVDAPCSGLGTLRRNPDMKWRQTVETLAEMRAKQSSILASAARLVRAGGRLVYGTCSFL 357

Query: 387 PQESEEQAAAFAHRH 401
            +E++E  A F   H
Sbjct: 358 EEENDEVIADFLQSH 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,375,112
Number of extensions: 54472
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 444
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,203,190
Effective search space: 428335640
Effective search space used: 428335640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)