BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0357.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DM...   135   6e-33

>gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  135 bits (339), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 159/315 (50%), Gaps = 36/315 (11%)

Query: 4   GILCALCAGLMWGLVFVTPLLLGDYPGVVLSLGRYVAFGLIA---LAPAWFDRRRIGLLS 60
           GIL +  AG  WGLVF+ P L   +    L+ GRY+A+GL A   +AP    RR +  L 
Sbjct: 9   GILYSALAGAAWGLVFLAPELTRSFSPWQLTAGRYLAYGLFAGVLIAPR--LRRLLPHLG 66

Query: 61  RQDWTVAFKLALVGNLIYYAMLATAIQLADAPLPTMLIGTLPIVISVCANWRPGHVSESV 120
           R +W     L+L+GN++YY  LA+A+QL    + +++IG LP+ +S+  +   G    +V
Sbjct: 67  RDEWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGEG----AV 122

Query: 121 AWSRLAPSLMILGLGLTLVNSSELERLRDTIGNARSTTDYALGCLIAVCAIAAWTWYPIV 180
              +L PSL    LGL  +     + L  ++  A    D  +G   A+ A+ +WT Y + 
Sbjct: 123 PLRKLVPSL---ALGLAGIACVAWQSL--SVSAAGQARDSVIGFFCALAALISWTTYAVG 177

Query: 181 NSRYLRTHTHINSVTW----ATAQGLATLPMALIGFALFGIYGVASGSDYAFPLGPRPGT 236
           NSR+L    HI++  W        GL +L +A+  F +               L P PG 
Sbjct: 178 NSRWLARLHHISAHDWNLLIGVVTGLLSLFVAVPAFTVM--------------LQPHPGH 223

Query: 237 ----FVVMMLVIGLSASWLGTLLWNKASQLLPTALVAQLIVFETLAALLYAFLLRGVAPD 292
               F  +   + + AS  G   WNKAS+LLP  ++ Q+I+FETL ALLY FL     P 
Sbjct: 224 DWLHFAAVSAGVAICASLFGNACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPT 283

Query: 293 LRVLAGAVLLCIGVV 307
           L  +A  VL+   V+
Sbjct: 284 LLEIAAMVLVTASVL 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,093,482
Number of extensions: 47150
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)