BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0354.p
         (394 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309421|ref|YP_003773513.1| transmembrane protein [Herbaspi...   357   1e-99

>gi|300309421|ref|YP_003773513.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 668

 Score =  357 bits (915), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 250/397 (62%), Positives = 301/397 (75%), Gaps = 6/397 (1%)

Query: 1   VAAVWTLITLFRPMVAGVRESLRSRSTFDDGS-ERPLTDRDLPVRAIALIGVAVMALLTL 59
           VAA+WTL TLF PMV GV+ SL + +    GS ER  TD+D+  R I +I +A++ LL +
Sbjct: 273 VAAIWTLATLFGPMVQGVKASLSTLARRQQGSTER--TDQDMSPRWIVIISLAMIGLLAV 330

Query: 60  IFSVFLIDARLSLPLLCGLVAMSLAFSCVFGFLVAAACGYMAGLVGSSSSPISGIGIIAM 119
           +F+ FL  A +S  L  GLV  ++ F+ VFGFLVAAACGYMAGL+GSSSSPISGIGI+A+
Sbjct: 331 VFASFLAGAPVSPALFAGLVVYAVVFAFVFGFLVAAACGYMAGLIGSSSSPISGIGIVAV 390

Query: 120 ILVSLLLLASGSVDHLLDAPGSSKLPIALAIFVTAAIIAIAAIANDNLQDLKTGWLVGAT 179
           ILVSLLLLASG VD LL  P   KL IA+A+FVTAAIIA+AAIANDNLQDLKTG LVGAT
Sbjct: 391 ILVSLLLLASGMVDTLLATPEGGKLAIAIALFVTAAIIAVAAIANDNLQDLKTGQLVGAT 450

Query: 180 PYRQQIALLIGCVVGAAVISPILELLYNAYGFVGALPRPGMDASHALAAPQATLMTAIAN 239
           P+RQQ+ALL+GCVVGA VI P+L LLYNAYGF GALPR GMDA+ ALAAPQATLMTAIA 
Sbjct: 451 PWRQQVALLVGCVVGALVIPPVLTLLYNAYGFTGALPRAGMDAAQALAAPQATLMTAIAT 510

Query: 240 GIFTHQLNWTMILIGVAIGALLIVIDIVLEKRGSKARVPALAVGLGIYLPPSVGMALVAG 299
           GIFT +LNWTM+ +GV +G LLIVID +L +RG  AR+P LAVG+GIYLPP V  AL  G
Sbjct: 511 GIFTRELNWTMLTVGVGLGILLIVIDWLLARRGGVARLPVLAVGIGIYLPPVVSSALFVG 570

Query: 300 ALIAWGLQ---LHLAKRKASGDKAGAGRIERRGVLVTSGLIVGESLMGVILAAVIGATGR 356
           AL+ W ++      A    +  +A A +  +RG+LV SGLIVGESL+GV+LA VIG TG+
Sbjct: 571 ALLGWFIERALRRRALAAGANVEAYADKPRQRGILVASGLIVGESLVGVVLAGVIGFTGK 630

Query: 357 DDPLALVGAGFAPAAQWLGLAVFALVIAWFVRRLLKA 393
           D PLALV   F    QWLGLA FAL++  F RR++ A
Sbjct: 631 DAPLALVSGSFESIGQWLGLAAFALILLAFARRIMPA 667


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,155,050
Number of extensions: 47873
Number of successful extensions: 316
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,207,925
Effective search space: 370832975
Effective search space used: 370832975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)