BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0353.p
         (528 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309427|ref|YP_003773519.1| Mg(2+) chelatase family protein...   606   e-174
gi|300313080|ref|YP_003777172.1| major facilitator superfamily p...    68   2e-12

>gi|300309427|ref|YP_003773519.1| Mg(2+) chelatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 507

 Score =  606 bits (1562), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 330/527 (62%), Positives = 386/527 (73%), Gaps = 25/527 (4%)

Query: 1   MSLAVLKSRALAGMQAPQVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALQNARFEF 60
           MSLAVL+SRALAGM AP VTVEVHLANGLPSF IVGLPE EVKE++DRVRAALQNARFEF
Sbjct: 1   MSLAVLRSRALAGMNAPPVTVEVHLANGLPSFAIVGLPEAEVKEARDRVRAALQNARFEF 60

Query: 61  PAKRITVNLAPADLPKESGRFDLPIALGILAASGQMPGDDLDEYEXAAGIPSLWLLALGL 120
           PA+RITVNLAPADLPKESGRFDL IALGILAAS Q+PGD LD+YE A  +     L+  L
Sbjct: 61  PARRITVNLAPADLPKESGRFDLAIALGILAASQQIPGDRLDDYEYAGELS----LSGQL 116

Query: 121 LTVGLLGGSVNGSSGRAVMGWFREGERGLAMSIRQTA--VPVGGGVGALVLPSLAAAHGF 178
           L +            R  +      + G +   R+ A  +P      A    +L      
Sbjct: 117 LPI------------RGALAMTCAMQHGASADERRRAFILPAANADEA----ALVTQAEI 160

Query: 179 APVYGLLALFCLLSAGMASDTDVRLTQHRPAIKPAAPAYLDFSDVKGQLQAKRALEVAAA 238
            P   LL +    ++    D   RL +HRP     AP Y DFS++KGQL A+RA+EVAAA
Sbjct: 161 VPARSLLEVCAHFTS---RDESTRLARHRPQQDALAPVYPDFSEIKGQLLARRAMEVAAA 217

Query: 239 GGHSVLLVGPPGTGKSMLAARFPGILPPMTDEEALESAAVQSLTSGFSAARWKVRPYRSP 298
           G HS+LLVGPPG GKSMLA RFPGILPPMT+ EALESAAV+SLT GF  ARW+ RP+R+P
Sbjct: 218 GRHSMLLVGPPGAGKSMLATRFPGILPPMTEAEALESAAVRSLTGGFDPARWRQRPFRAP 277

Query: 299 HHTASGVALVGGGSTPRPGEISLAHRGVLFLDELPEFDRKVLEVLREPLESGQITISRAA 358
           HHTAS VALVGGGS PRPGEISLAH GVLFLDE+ E+ R VLEVLR+P+ESGQITISRAA
Sbjct: 278 HHTASAVALVGGGSPPRPGEISLAHHGVLFLDEIAEYRRSVLEVLRQPMESGQITISRAA 337

Query: 359 RQADFPARFQLIAAMNPCPCGFLGARHRECRCTPDQVTRYQGKISGPLLDRIDMQIQVGA 418
           RQADFPARFQL+AAMNPCPCG+ G    +CRC+P+ V RYQ ++SGPLLDRIDMQ+QV A
Sbjct: 338 RQADFPARFQLLAAMNPCPCGYHGQASGQCRCSPEMVRRYQQRLSGPLLDRIDMQLQVAA 397

Query: 419 IAHDDLLQQAAGEASADIAARVASSFEVQQRRQRKSNYLLSTTEIDLHCKPDAAGEDLLR 478
           ++  +L  QA+GE++A IAARVA +FE Q  RQ K N  L+  EID HC+P      LL+
Sbjct: 398 LSPGELAVQASGESTARIAARVAVAFERQISRQGKPNSALAGAEIDRHCQPGPDAAQLLQ 457

Query: 479 TAMTRLNWSARAYHRVLKVARTIADLSQVPIIGKVHIAEAIQYRRAL 525
           TAM RL WSARAYHRVLK+ART+ADL+    I + H+AEAIQYRR L
Sbjct: 458 TAMLRLGWSARAYHRVLKLARTMADLAAAEQIDRQHVAEAIQYRRGL 504


>gi|300313080|ref|YP_003777172.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 55/67 (82%)

Query: 129 SVNGSSGRAVMGWFREGERGLAMSIRQTAVPVGGGVGALVLPSLAAAHGFAPVYGLLALF 188
           SVNG+SGRA+MGWF EGERGLAMSIRQTAVP+GGG+GAL+LP+LAA  GF  V+  L   
Sbjct: 132 SVNGASGRAIMGWFGEGERGLAMSIRQTAVPLGGGLGALLLPTLAAQAGFGAVFAALMAA 191

Query: 189 CLLSAGM 195
           CL S G+
Sbjct: 192 CLASVGL 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,569,012
Number of extensions: 65248
Number of successful extensions: 410
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 4
Length of query: 528
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 438
Effective length of database: 1,193,720
Effective search space: 522849360
Effective search space used: 522849360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)