BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0349.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309429|ref|YP_003773521.1| membrane protein [Herbaspirillu...   434   e-123

>gi|300309429|ref|YP_003773521.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 262

 Score =  434 bits (1116), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/263 (85%), Positives = 245/263 (93%), Gaps = 1/263 (0%)

Query: 1   MKKLILAAAVAASFASSFAHAEDAPKPDNEFTFNAAVVSDYRYRGLTQTRFDPALQVGAD 60
           MKKLILA A+AASF S+ A AEDA KPDNEF+FNAAVVSDYRYRGLTQTRFDPALQVGAD
Sbjct: 1   MKKLILATAIAASFVSTVARAEDA-KPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGAD 59

Query: 61  YTNNPTGLYLGTWATNIKWIKDAGANTTPPTNTKGNIEWDIYGGKRGDIGGGFTYDVGGL 120
           YT+NPTGLY GTW TNIKWIKDAGA  +PP NTKG+IEWDIYGGKRGDIGGGFTYDVGGL
Sbjct: 60  YTHNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGL 119

Query: 121 YYYYPGNTLANSGVKNANTFELYGQVGYGPGYFKYSQSLTNLFGAVNSKYSQYYDLGANI 180
           YYYYPGNTLA+SG KNANTFELYGQVGYGPGYFKYSQSLTNLFGA NSKYSQY+DLGANI
Sbjct: 120 YYYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANI 179

Query: 181 DSYFGTVVGLHLGHQSVHGSTAQFSYNDWKIGVSKTFEDLAGITLGVAYVGTDLKDGVST 240
           ++Y+G ++GLH+GHQ+V G+  QFSY DWKIGVSKTF+DLAGITLG+AYVGTDLKDGV+T
Sbjct: 180 ETYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTT 239

Query: 241 TPASNGLKNVGRNGVVFSLSKTF 263
           TPAS+GLKNVG+NG VFSLSKTF
Sbjct: 240 TPASDGLKNVGKNGFVFSLSKTF 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 823,124
Number of extensions: 34635
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)