BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0345.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309433|ref|YP_003773525.1| glutathione synthetase [Herbasp...   574   e-165

>gi|300309433|ref|YP_003773525.1| glutathione synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score =  574 bits (1480), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/312 (87%), Positives = 291/312 (93%)

Query: 1   MKIAFLADPLDTFKTYKDSTFAMMREAARRGHAIYAFEQTDVVLESGLVTANVAKITLTG 60
           MKIAFLADPLDTFKTYKDSTFAMMREAARRGH +YAFEQ D+VLESGLVTAN  K+TLTG
Sbjct: 1   MKIAFLADPLDTFKTYKDSTFAMMREAARRGHVLYAFEQADLVLESGLVTANACKLTLTG 60

Query: 61  DADDWYRADAPASTFLSEFDAIVIRKDPPFDMEYIYTTYLLELAEKQGARVFNKPEAIRS 120
           DADDWYR D P S+FLSEFDA+++RKDPPFDMEYIYTTYLLELAEKQGARVFNKP AIRS
Sbjct: 61  DADDWYRTDKPVSSFLSEFDAVIVRKDPPFDMEYIYTTYLLELAEKQGARVFNKPAAIRS 120

Query: 121 HNEKLAIAQFPQYTAPTLVTRDAKRLRAFHAEHKDVILKPLDGMGGMGIFRIGQDGMNLG 180
           HNEKLAIAQFPQYTAPTLVTRDAKRLRAFHAEH+DVILKPLDGMGGMGIFR+  DGMNLG
Sbjct: 121 HNEKLAIAQFPQYTAPTLVTRDAKRLRAFHAEHQDVILKPLDGMGGMGIFRVKADGMNLG 180

Query: 181 SVIETLTDNGNRTIMAQRFIPEISKGDKRILLIGGKVVPHVLARIPQGGEVRGNLAAGGL 240
           S+IETLTDNG RTIMAQRFIP+IS GDKRILLIGGKVVP+VLARIPQG EVRGNLAAGGL
Sbjct: 181 SIIETLTDNGQRTIMAQRFIPQISAGDKRILLIGGKVVPNVLARIPQGNEVRGNLAAGGL 240

Query: 241 GVAQPISPRELEIAEALAPVLAQRGLLLVGLDAIGNYLTEINVTSPTCFQEITQQSGFDV 300
           G AQP S R++EI EAL PVL +RGLLLVGLDAIG+YLTEINVTSPTCFQEITQQ+GFDV
Sbjct: 241 GRAQPASARDIEIGEALGPVLHERGLLLVGLDAIGDYLTEINVTSPTCFQEITQQTGFDV 300

Query: 301 AAMFVDALETAV 312
           AAMFVDALE  V
Sbjct: 301 AAMFVDALEAEV 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,027,117
Number of extensions: 46600
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)