BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0341.p
         (455 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309436|ref|YP_003773528.1| phosphoenolpyruvate-protein pho...   781   0.0  

>gi|300309436|ref|YP_003773528.1| phosphoenolpyruvate-protein
           phosphotransferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/457 (84%), Positives = 421/457 (92%), Gaps = 4/457 (0%)

Query: 1   VLKVLTGSAISLPPVAGEGAAASIIVVAHDISPADMLQFRDGAFAGFVTDLGGQNSHTAI 60
           +LKVLTGSA  LPP +GE AAA+II+VAHDISPADMLQFR+  FAGFVTDLGG NSHTAI
Sbjct: 141 ILKVLTGSATHLPP-SGE-AAANIIIVAHDISPADMLQFRESTFAGFVTDLGGPNSHTAI 198

Query: 61  VARSLDIPAAVGMNNASVLVKQEDVLIIDGDAGVAIVNPSPLVLAQYRARQERMLRDRKK 120
           VARSL IPAAVGM+NASVLVK +DVLIIDGDAGV IV+PSPLVLAQYRARQER+LR+RKK
Sbjct: 199 VARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPSPLVLAQYRARQERLLRERKK 258

Query: 121 LGRLKKTPAITQDGTEITLLANIELPSDSAPALEAGANGVGLFRSEFLFMGRAGHLEKFP 180
           L RLKKTPAITQDG  ITLLANIELP D+  A EAGA G+GLFRSEFLFMGRAGHLEKFP
Sbjct: 259 LSRLKKTPAITQDGEPITLLANIELPGDAVTAFEAGAMGIGLFRSEFLFMGRAGHLEKFP 318

Query: 181 SEDEQFDSYCQTVVSMKGRPVTIRTLDVGADKPLDEDEQTALNPALGLRAIRYCLSEPQM 240
           SEDEQF+ Y Q V++MKGR VTIRTLDVGADKPLDEDE+TALNPALGLRAIRYCLSEPQM
Sbjct: 319 SEDEQFEHYKQAVIAMKGRSVTIRTLDVGADKPLDEDEETALNPALGLRAIRYCLSEPQM 378

Query: 241 FLTQLRAILRASAFGPIKLLIPMMAHAFEIDQTLALIEQAKGQLRQRKQKFDEDIEIGAM 300
           FLTQLRAILRASAFGPIKLL+PMMAHAFEIDQTLA+I+QAK QLR+RKQKFDE+I +GAM
Sbjct: 379 FLTQLRAILRASAFGPIKLLVPMMAHAFEIDQTLAMIDQAKQQLRERKQKFDEEIPVGAM 438

Query: 301 IEIPAAALALPMFIKRLDFLSIGTNDLIQYTLAIDRVDHEVAHLYDPLHPAVLFLLSSVI 360
           IEIPAAALALP+F+KRLDFLSIGTNDLIQYTLAIDRVDHEVAHLYDPLHPAVLFLLS+VI
Sbjct: 439 IEIPAAALALPLFVKRLDFLSIGTNDLIQYTLAIDRVDHEVAHLYDPLHPAVLFLLSTVI 498

Query: 361 SMARKAGIPVAVCGEMAGDVKWTRLLLGMGLLEFSMHPSQLLSVKQEILNSDLTLLEPQV 420
           S  RKAGIPV+VCGEMAGD+KWTRLLLGMGLLEFSMHPSQ+LSVK EILNSDL LLEPQV
Sbjct: 499 SQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQILSVKNEILNSDLRLLEPQV 558

Query: 421 KKVLKASEPSAIEAAMAQLRAINSEPEIKAA--ARRR 455
           KKVL+A+EP+AI AAM QL+A+ +EP +  A  ARRR
Sbjct: 559 KKVLRATEPAAITAAMTQLQALQAEPVVTEAKVARRR 595


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,361,590
Number of extensions: 57717
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,203,190
Effective search space: 441570730
Effective search space used: 441570730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)