BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0326.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309450|ref|YP_003773542.1| hemin transport protein [Herbas...   392   e-110

>gi|300309450|ref|YP_003773542.1| hemin transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  392 bits (1006), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/363 (53%), Positives = 254/363 (69%), Gaps = 12/363 (3%)

Query: 21  CSTTPNSNLAERWSALRVEQPKLQPRDAAQKLNVSEAELVATNVGKGATRLRDGGPAYKA 80
           C+  P + L++RW+ L+  QP+L  R+AA +L VSEAEL+A++    ATRL       +A
Sbjct: 24  CAANPPT-LSQRWTQLQQAQPRLHLREAAHQLGVSEAELLASDANWQATRLTSDARDLQA 82

Query: 81  VYDRLHELGQIKAITRNDNAVLERVGTVTQAKLNADGRVIPGTGFAGGPIDLRFGADQWR 140
           +Y+RL ELG+IKA+ RND+ +LER G VT A+ +  GRV+PGTG AGGPIDLR G  QW 
Sbjct: 83  LYERLAELGRIKAVIRNDDVMLERTGAVTPARRDEQGRVVPGTGLAGGPIDLRIGGVQWG 142

Query: 141 SAFAVVQPGREGKTSRSLQFFDVHGNAVNKVYLDNEAGVAAFDKLVADFKAPEQLAYLSV 200
           SAFAV QPGR+GK  RSLQFFD HG A++K+YLDN+  +AA+++LVA+F+   Q A L  
Sbjct: 143 SAFAVAQPGRDGKALRSLQFFDQHGQAIHKIYLDNDEHIAAYERLVAEFRIAGQPAPLIA 202

Query: 201 DKAPAKVVTKPNVEV-------DVKELRDTWNELSDVHEFPRLLKDLGITREQALDLIGK 253
             AP    T+P  +V       DV +LR  W +L+DVH+FPRLL++L ++REQAL LIG 
Sbjct: 203 LPAP----TQPPADVRGTASAADVAQLRQAWTKLTDVHQFPRLLRELKLSREQALQLIGD 258

Query: 254 DAAYRISAQSVQTLLDSAARQGQPIMVFVSNPGMTQIFSGKITKVKATEEWYNVLDPDFN 313
           D+A+RISAQ +Q L+D A  + QPIM FVS  GMTQI+SG I +   +  WY VL  DF 
Sbjct: 259 DSAWRISAQGLQLLMDDARARRQPIMAFVSQGGMTQIYSGMIDRSSNSGAWYEVLGEDFR 318

Query: 314 LHLRQAGIDRGWVVKRPAKDGVITSVEFYDAKGEQVVNFFSRRDRNKEETTTWRNIVANL 373
           L +R A ID GWVV+RP   G++TSVEFYDA G Q+VNFFSRRDR + ET  WR +V  L
Sbjct: 319 LKVRSATIDHGWVVRRPTDHGMVTSVEFYDAAGRQLVNFFSRRDRGQPETAQWRRMVEAL 378

Query: 374 TKT 376
            ++
Sbjct: 379 PRS 381


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,181,320
Number of extensions: 50116
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)