BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0315.p
         (137 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309459|ref|YP_003773551.1| 50S ribosomal protein L2 [Herba...   253   5e-69

>gi|300309459|ref|YP_003773551.1| 50S ribosomal protein L2
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  253 bits (645), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 121/132 (91%), Positives = 128/132 (96%), Gaps = 1/132 (0%)

Query: 1   MVKVVS-DLYKGRPFAGLIEKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDFRRNKDGIV 59
           MVKVV+ DLYKGRP A L+EKKSKTAGRNNNGHITTRHIGGGHKQHYRV+DFRRNKDGI 
Sbjct: 16  MVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQHYRVVDFRRNKDGIP 75

Query: 60  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGIAVGDQLISGSEAPIKAGNSLPIRNI 119
           AKVERIEYDPNRTAHIALLCYADGERKYIIAPKG++VGDQLISGSEAPIK+GN+LPIRNI
Sbjct: 76  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGSEAPIKSGNTLPIRNI 135

Query: 120 PVGTTIHCVEML 131
           PVGTTIHCVEML
Sbjct: 136 PVGTTIHCVEML 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 386,037
Number of extensions: 13983
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,260,010
Effective search space: 76860610
Effective search space used: 76860610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)