BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0286.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange tra...   347   7e-97

>gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score =  347 bits (891), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 174/275 (63%), Positives = 205/275 (74%), Gaps = 7/275 (2%)

Query: 35  EEYLAPEAAFRFSAVMVDARTLQITYAIADGYYMYRDRFHFKADGATLGQPDFPHGKVKY 94
           E+YL PE AF+ S  MVDA+TL+++Y IADGYYMYRDRFHF A+GATLG+P FP GK KY
Sbjct: 40  EDYLPPEQAFQLSGRMVDAQTLELSYRIADGYYMYRDRFHFSAEGATLGEPQFPAGKRKY 99

Query: 95  DENFQKEVETYRNSVSIRIPVEAGASGDTFKLIATAQGCADKGLCYPPMNTAAEMSTSAV 154
           DENFQ+EVETY  SV+ R+PV      D F + A +QGCADKGLCYPPM     MS  A+
Sbjct: 100 DENFQQEVETYHQSVTARVPVSGAV--DKFVVAAVSQGCADKGLCYPPMTLKLTMSAQAI 157

Query: 155 GKVVGPADASGNAAFISMAGSGSDMDRISAALKSGKLPAVLSLFFLLGVGLSFTPCVLPM 214
           G+ V PA A G    +  +  GSD+D I+A LK GKL ++LSLFF+LG+GLSFTPCVLPM
Sbjct: 158 GQSVSPAGAEGA---VQGSAGGSDIDGIAAVLKGGKLWSILSLFFVLGIGLSFTPCVLPM 214

Query: 215 VPILSSIIVGE--GAQAKRGRGLLLSAVYVLGMALVYTALGIAAGLIGEGLSAALQNPWV 272
           +PILSSIIVG+   A   RGR  LLS  Y LGMALVYT LG+ AG++GEGLSA LQNPWV
Sbjct: 215 LPILSSIIVGQQPAAGGGRGRSFLLSVNYSLGMALVYTGLGVVAGMLGEGLSAYLQNPWV 274

Query: 273 LTAFALLMVGLSLSMFDYYQLQVPAAWQXRRRQES 307
           L AFALLM GL+LSMFD Y LQVPA+ Q +    S
Sbjct: 275 LGAFALLMAGLALSMFDLYTLQVPASLQSKLSTAS 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 999,991
Number of extensions: 35833
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)