BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0285.p (314 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309487|ref|YP_003773579.1| LysR family transcription regul... 494 e-141 gi|300313164|ref|YP_003777256.1| LysR family transcription regul... 298 4e-82 gi|300310701|ref|YP_003774793.1| LysR family transcription regul... 256 1e-69 gi|300310375|ref|YP_003774467.1| LysR family transcription regul... 148 7e-37 gi|300310484|ref|YP_003774576.1| LysR family transcription regul... 85 6e-18 >gi|300309487|ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 494 bits (1272), Expect = e-141, Method: Compositional matrix adjust. Identities = 252/309 (81%), Positives = 280/309 (90%) Query: 1 MMQEIPSLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQ 60 M +PSL+SITSRLHL+QLRLLIAL+DHGSLLKAAEQVALTQPGASKALQEIE+TLG Q Sbjct: 1 MHNTLPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQ 60 Query: 61 LFVRTNRGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVPLLT 120 LF RTNRGLE T+LGHCVIRYARLIQTDL HLRE+M+ I+QGHGGRLA+G IMGAVPLLT Sbjct: 61 LFTRTNRGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMGAVPLLT 120 Query: 121 DALTRLLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKL 180 DALTRLLE PALSVEIVEDTSARLLRLLDQGRLD+AICRTSISQ+P LYD+ +IH E+L Sbjct: 121 DALTRLLEAHPALSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEEL 180 Query: 181 AVVANINHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSA 240 AVVA++ HPLA +LQL DL DSRWVVYSANMPMRL LEREFH+A+LRFPLHL+ETTSA Sbjct: 181 AVVASVQHPLADAPSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSA 240 Query: 241 FTTLSLLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGSMRSSVAQ 300 FTTLSLLQ+NP FVAL+SVDVAQFCTRFGMT ILPL LH+RSEPYQLVTR G+M S VA+ Sbjct: 241 FTTLSLLQKNPHFVALLSVDVAQFCTRFGMTRILPLRLHTRSEPYQLVTRRGTMLSPVAR 300 Query: 301 LFIDEFTET 309 LF+D+F T Sbjct: 301 LFLDDFART 309 >gi|300313164|ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 298 bits (763), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 149/300 (49%), Positives = 216/300 (72%), Gaps = 1/300 (0%) Query: 4 EIPSLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFV 63 E+PS+ SI SRL +Q+ LL AL + GSL KAAE + +TQP A+KAL E+E LG LF Sbjct: 19 ELPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFD 78 Query: 64 RTNRGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVPLLTDAL 123 R+ RG+EAT+LG CVIRYARLIQ+D+A+LR+++ ++ G GGRLA+G IMGA P +T AL Sbjct: 79 RSPRGIEATELGRCVIRYARLIQSDVANLRDELQNMISGRGGRLAIGTIMGAAPFVTRAL 138 Query: 124 TRLLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKLAVV 183 +RL E +P +S+EI EDTSAR L LLDQGR+D+ I R+S+S QP+LY + E + +V Sbjct: 139 SRLREIQPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIV 198 Query: 184 ANINHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTT 243 + I+HPLA + ++L +L ++ W++YS+NMPMR+ +E EF ++ P +++ET S F T Sbjct: 199 SGIDHPLATAQKVRLQELAEASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVT 258 Query: 244 LSLLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGSMRSSVAQLFI 303 ++LL ++ + VA+M +D+A F M ILP+ L +R E Y +VTR + SS+A++FI Sbjct: 259 ITLLAQS-NMVAVMPLDIAHFFAAKQMLGILPVNLKTRIEHYGIVTRKNTTLSSLAKMFI 317 >gi|300310701|ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 256 bits (655), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 141/303 (46%), Positives = 188/303 (62%), Gaps = 1/303 (0%) Query: 7 SLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFVRTN 66 SL+S+ SRL +KQL+LLIAL +H SL KA+ +A+TQ ASK+L E+E+ L AQLF RT Sbjct: 16 SLNSLLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLDAQLFERTK 75 Query: 67 RGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVP-LLTDALTR 125 GL A GHCVIRYARL+ TDL L E+M I G GGRLA+G +MGAVP L+ A+ Sbjct: 76 SGLIANPFGHCVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVPALIVPAVDA 135 Query: 126 LLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKLAVVAN 185 L + PALS+EIVEDTS +L LLD+G LD+ + R S+S P Y + E L+VV + Sbjct: 136 LQRRHPALSIEIVEDTSLHMLDLLDEGHLDLLVARASVSAHPGKYHYQSLSEEPLSVVVS 195 Query: 186 INHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTTLS 245 HP + LQL L RW+ Y ++MP+ +LERE A L P + + T S F T++ Sbjct: 196 AEHPRPRGKELQLAALAGYRWITYPSHMPLHAVLEREMDLAGLSMPANTIATASTFVTVA 255 Query: 246 LLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGSMRSSVAQLFIDE 305 LLQ+ V+++ VA+ + GM ILP+ L S S+ +VTR G S Q F+ Sbjct: 256 LLQQGADMVSILPTAVAEMFVQRGMLRILPVKLRSMSQTIGIVTRKGGQLSGAGQAFVQL 315 Query: 306 FTE 308 E Sbjct: 316 LRE 318 >gi|300310375|ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 148 bits (373), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 13 SRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFVRTNRGLEAT 72 +RL +QL LLIAL D ++ +AA ++ +TQP ASK L+++E LG LF R RG+ T Sbjct: 12 ARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMRPT 71 Query: 73 DLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMG-AVPLLTDALTRLLEKRP 131 G +IR+AR+ T L+ ED++ + G G++ +G I+ A+ LL A+ R+ E+ P Sbjct: 72 IYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVKEQAP 131 Query: 132 ALSVEIVEDTSARLLRLLDQGRLDMAICRT--SISQQPHLYDSIDIHNEKLAVVANINHP 189 L + + ++S LL L G LD I R ++ LY+ ++ +E + VA + HP Sbjct: 132 MLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYE--ELADEPICAVARVGHP 189 Query: 190 LAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTTLSLLQR 249 R L L DL W++ +R ++ F E L P ++++TT+ SLLQ+ Sbjct: 190 FHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQ 249 Query: 250 NPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGSMRSSVAQLFIDEFTET 309 F+ M +VA++ T+ + ILP+ L R + ++TR ++ S A L + E Sbjct: 250 T-DFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQAIREV 308 Query: 310 PK 311 K Sbjct: 309 AK 310 >gi|300310484|ref|YP_003774576.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 85.1 bits (209), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 14/251 (5%) Query: 15 LHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFVRTNRGLEATDL 74 +L+QL + A+ GSL +AA + LTQP S+A++ +E ++G LF R +G+ T L Sbjct: 3 FNLQQLEMFNAIVSAGSLGRAAALLNLTQPALSRAIKRLEESVGGALFERHTKGMHLTVL 62 Query: 75 GHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVI-MGAVP-----LLTDALTRLLE 128 G ++ +A +Q + RE++ I LA GVI +GAV +L A+ +L+ Sbjct: 63 GQALLPHAMSLQREAQQAREELDAIRG-----LAKGVIKVGAVGSIASLVLPLAVRGVLD 117 Query: 129 KRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKLA-VVANIN 187 K P L VEI+E RL+ L +D+A+ TS Q + D L+ VVA + Sbjct: 118 KWPNLRVEIIEGVWDRLVEGLLTHEIDLALS-TSGGQTEGVAAIADCCWTDLSYVVAAPD 176 Query: 188 HPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTTLSLL 247 HPL + + L + RW + L ++ F L P +E+ S SL+ Sbjct: 177 HPLRQQGRIALEQTLGQRWALTPKGTGPYLHVQETFARHGLPMPEIAVESRSVTVLKSLV 236 Query: 248 QRNPSFVALMS 258 R F+ MS Sbjct: 237 ARC-GFIGWMS 246 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 854,456 Number of extensions: 32013 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 41 Length of query: 314 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 229 Effective length of database: 1,217,395 Effective search space: 278783455 Effective search space used: 278783455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)