BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0284.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   166   9e-43

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  166 bits (421), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 92/116 (79%), Gaps = 4/116 (3%)

Query: 1   MALINYITQVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDGAQVA 60
           MALINYITQVQFD+GALALLQQECDR+GI+KPL+VTDMGIRNAG+LDKV+ QLK+G    
Sbjct: 1   MALINYITQVQFDYGALALLQQECDRLGIKKPLVVTDMGIRNAGLLDKVLGQLKEGVGAV 60

Query: 61  VFDQTPPNPNEAAVRAAVKLFRDSACDGIMTRVALGLIAKIHAARRVHHICGIHRS 116
           V+DQTPPNPNE AVRAAV LFR   CDGI   VA+G  + I  A+ V  +CG H  
Sbjct: 61  VYDQTPPNPNEGAVRAAVALFRQHGCDGI---VAVGGGSSIDLAKGV-AVCGTHEG 112


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,948
Number of extensions: 19367
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)