BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0282.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309489|ref|YP_003773581.1| NAD-dependent dehydrogenase [He...   274   3e-75

>gi|300309489|ref|YP_003773581.1| NAD-dependent dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 529

 Score =  274 bits (700), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 129/158 (81%), Positives = 147/158 (93%)

Query: 1   VPHLFKAEASVLFTKEAPLEEEVFGPATVIVELESREQLIDFARNMQGQLTATLQAQPED 60
           VPHLFKA+A++LF+KEAPLEEEVFGP+TVIVELESREQL+DFA  M GQLTATLQA+  D
Sbjct: 372 VPHLFKADAALLFSKEAPLEEEVFGPSTVIVELESREQLLDFAAKMNGQLTATLQAEIGD 431

Query: 61  LRAHQDLIALLEQKAGRLLVNGFPTGVEVSDAMVHGGPYPATSDARGTSVGTLAIDRFLR 120
           L+ +QDLIA+LEQKAGRLL+NGFPTGVEV DAMVHGGPYPATSDARGTSVG+LAI+RFLR
Sbjct: 432 LQGNQDLIAILEQKAGRLLLNGFPTGVEVCDAMVHGGPYPATSDARGTSVGSLAIERFLR 491

Query: 121 PICYQNYPDELLPAALQNSNPLGLLRLVDGEPTKAVVN 158
           P+CYQNYPD +LPAALQN+NPLGL+RLVDGE T+A V 
Sbjct: 492 PVCYQNYPDAMLPAALQNANPLGLMRLVDGEQTRATVG 529


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 529,949
Number of extensions: 22051
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)