BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0280.p (276 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 240 9e-65 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 231 3e-62 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 208 3e-55 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 208 4e-55 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 207 5e-55 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 240 bits (612), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 125/253 (49%), Positives = 160/253 (63%), Gaps = 4/253 (1%) Query: 11 VRLAGISKSFTSGKQAATPVLSDISLELEQGELVCLLGPSGCGKSTILNLIAGFEQADQG 70 +++ S F+ + L +SL++ G V LG SGCGKST+LN +AGF +G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 71 AILLDGVAVNKPGPERGVVFQQPTLFPWLSVLDNVTFGPRMAGIKKSVYLPEAERYLRLV 130 I LDG V+ PG ERGVVFQ+ +L PW SV DNV G + AG+ KS A+ LRLV Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 131 GLQDFQHHMPWQLSGGMRQRAALARAWLPNPEILLMDEPFGALDAQTRLMMQELLTSVWQ 190 GLQDF P++LSGGMRQR LARA PNP+ILLMDEPFGALD+ TR MQELL SVW Sbjct: 122 GLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWA 181 Query: 191 TTGTTILFITHDVDEALFLADRVLVMSARPGRICAEFKLPFPRPR----DVELLVADTSY 246 TG + FITH ++EALFL V+VMS RPGRI A F+ F R + + + ++ Sbjct: 182 RTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPAF 241 Query: 247 GALKQKILHIVRE 259 L+++I IV + Sbjct: 242 AELREEIRAIVHQ 254 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 231 bits (590), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 122/273 (44%), Positives = 169/273 (61%), Gaps = 6/273 (2%) Query: 1 MNQIAQLPARVRLAGISKSFTSGKQAATPVLSDISLELEQGELVCLLGPSGCGKSTILNL 60 MNQ P R+R+ G+ K F + + L DI+L++ G+ VCLLGPSGCGKST+LN Sbjct: 1 MNQTNASP-RIRIQGVHKVFKTDDREVV-ALKDINLDIPDGQFVCLLGPSGCGKSTLLNA 58 Query: 61 IAGFEQADQGAILLDGVAVNKPGPERGVVFQQPTLFPWLSVLDNVTFGPRMAGIKKSVYL 120 IAGF G IL D V++PGP+RG+VFQ+ LFPW++V NV FG + G K+ Sbjct: 59 IAGFALPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIH 118 Query: 121 PEAERYLRLVGLQDFQHHMPWQLSGGMRQRAALARAWLPNPEILLMDEPFGALDAQTRLM 180 + L +GL DF+ P LSGGMRQR A+AR + I+LMDEPFGALDA TR Sbjct: 119 QRVTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRN 178 Query: 181 MQELLTSVWQTTGTTILFITHDVDEALFLADRVLVMSARPGRICAEFKLPFPRPRDVELL 240 +Q+ L +W TI+F+TH ++EA++LADR++VM+ RPG + + + PR RD Sbjct: 179 LQDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRD---- 234 Query: 241 VADTSYGALKQKILHIVREEARKSMAGTGAAAA 273 AD + ALK+++ +V EE ++ AAA Sbjct: 235 PADPEFNALKRELGQLVMEEQQRHHNAEMKAAA 267 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 208 bits (530), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 108/258 (41%), Positives = 157/258 (60%) Query: 3 QIAQLPARVRLAGISKSFTSGKQAATPVLSDISLELEQGELVCLLGPSGCGKSTILNLIA 62 Q AQ + L +S F + AT L D S+ + +GE V ++GP+GCGKST L+LI Sbjct: 14 QAAQETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLIT 73 Query: 63 GFEQADQGAILLDGVAVNKPGPERGVVFQQPTLFPWLSVLDNVTFGPRMAGIKKSVYLPE 122 G + G + + G VN P G VFQ +FPW SV +NV GP G K+ Sbjct: 74 GLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHAL 133 Query: 123 AERYLRLVGLQDFQHHMPWQLSGGMRQRAALARAWLPNPEILLMDEPFGALDAQTRLMMQ 182 A+ ++R VGL F H P QLSGGMR+R ALA+ ++ +PEILLMDEPF ALD QTR +MQ Sbjct: 134 ADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQ 193 Query: 183 ELLTSVWQTTGTTILFITHDVDEALFLADRVLVMSARPGRICAEFKLPFPRPRDVELLVA 242 + L +W +++F+THD++EA+ LAD+V V++ARP + + + + PRPR +E + Sbjct: 194 DELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRY 253 Query: 243 DTSYGALKQKILHIVREE 260 + + + ++I +REE Sbjct: 254 EQRFIDISRRIWADLREE 271 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 208 bits (529), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 108/212 (50%), Positives = 143/212 (67%), Gaps = 5/212 (2%) Query: 26 AATPVLSDISLELEQGELVCLLGPSGCGKSTILNLIAGFEQADQGAILLDGVAVNKPGPE 85 + +++ I L++ GE VCLLGPSGCGKST+LN IAGF+ G I +DG V PG + Sbjct: 17 GSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDV-SGEISVDGKRVKGPGLD 75 Query: 86 RGVVFQQP-TLFPWLSVLDNVTFGPRMAGIKKSVYLPEAERYLRLVGLQDFQHHMPWQLS 144 RGVVFQ LFPWLSV +NV +G ++ G+ + AERY+ LVGL+ P +LS Sbjct: 76 RGVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELS 135 Query: 145 GGMRQRAALARAWLPNPEILLMDEPFGALDAQTRLMMQELLTSVWQTTGTTILFITHDVD 204 GGMRQRA +AR + P ++LMDEPFGALDAQTR ++Q L +W++TG TI+F+THD+ Sbjct: 136 GGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIW 195 Query: 205 EALFLADRVLVMSARPG---RICAEFKLPFPR 233 EA+ LADRV+ M+A P + E LP PR Sbjct: 196 EAILLADRVVTMTAGPRAHIKTIEEVHLPHPR 227 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 207 bits (528), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 104/246 (42%), Positives = 155/246 (63%), Gaps = 12/246 (4%) Query: 30 VLSDISLELEQGELVCLLGPSGCGKSTILNLIAGFEQADQGAILLDGVAVNKPGPERGVV 89 V+ + + E+ GELV L+GPSGCGKST+L++ AG E+ G++ DG + P PER ++ Sbjct: 17 VIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLM 76 Query: 90 FQQPTLFPWLSVLDNVTFGPRMAGIKKSVYLPEAERYLRLVGLQDFQHHMPWQLSGGMRQ 149 FQ+ L+PWL++ NV + K +A +L V L+ F+H+ P Q+SGGMRQ Sbjct: 77 FQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQ 136 Query: 150 RAALARAWLPNPEILLMDEPFGALDAQTRLMMQELLTSVWQTTGTTILFITHDVDEALFL 209 RAALARA++ P+ LL+DEPFGALDA TR+ +Q+ L + + G T++ +THDVDEALFL Sbjct: 137 RAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFL 196 Query: 210 ADRVLVMSARPGRICAEFKL-PFPRPRDVELLVADTSYGALKQKIL-----HIVREEARK 263 ADR+ V S RP ++ EF L + D+ + + A+++ IL H ++E K Sbjct: 197 ADRIFVFSPRPAKVLKEFNLVHHEKTHDL------SEFAAIRRDILCLLGIHAEQDEFAK 250 Query: 264 SMAGTG 269 ++ G G Sbjct: 251 NIEGVG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 919,686 Number of extensions: 39866 Number of successful extensions: 525 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 139 Length of query: 276 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 192 Effective length of database: 1,222,130 Effective search space: 234648960 Effective search space used: 234648960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)