BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0279.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 199 2e-52 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 146 1e-36 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 140 1e-34 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 122 3e-29 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 115 5e-27 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 199 bits (507), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/262 (42%), Positives = 169/262 (64%), Gaps = 2/262 (0%) Query: 7 RNTGLGMGPAKRAAVSTAAVALVLGVWQLSGSLHWIDPLLLPPPSEIFQTTGDILADGYR 66 R+ G+ G R +S AA ++L +W L W+ L LP P+E+ + I DGY Sbjct: 34 RSFGIAEGSTAR--ISIAAGIVILALWWLIAQTGWVPHLFLPTPAEVLKVAQSIWEDGYA 91 Query: 67 QVSLWQHILVSVLRATVAFVAAIAAGIPLGLAMGLSQPVSAVLEPFVQFLRPLPKIALIP 126 +L +H+ S+LR A V A+ GIP+GL MGL++ V VL+ ++F PLP +A +P Sbjct: 92 NATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLP 151 Query: 127 LTVVWFGIGEGSKFFLIFISCFLSVVVSAAAAAVGVNKNRLRAAQTLGANRYQLFTRVVL 186 L ++W GIGE SK L+ ++ F VV+SA A + + R+ AA +LGA R+QL T VVL Sbjct: 152 LMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVL 211 Query: 187 PNALPEIFTGVRLSIGIGWTSLIAAEMVAANSGLGWMVINAGTYLRTDVVMLGILLLGII 246 P+ALPEI TG+R+++G+GW++L+AAE++A+N G+G+M+++A +L TD V +GI L+ Sbjct: 212 PSALPEILTGIRIALGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATC 271 Query: 247 GYLFDLALVLLQRAFVPWAGRD 268 + F + LL+RA VPW G+ Sbjct: 272 AFAFSYGMRLLERALVPWKGKS 293 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 146 bits (369), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 147/252 (58%), Gaps = 6/252 (2%) Query: 8 NTGLGMGPAKRAAVSTAAVALVLGVWQLSGSLHWIDPLLLPPPSEIFQTTGDILADGYRQ 67 N G + A+ +S A+ L +WQL SL PL LP S + ++++DG Q Sbjct: 4 NLGRRLKAARPFLISVIAIVGGLVLWQLV-SLT-TSPLFLPSVSMTWAAALELISDGTLQ 61 Query: 68 VSLWQHILVSVLRATVAFVAAIAAGIPLGLAMGLSQPVSAVLEPFVQFLRPLPKIALIPL 127 Q +L S R + A + G+PLG+ MG + V +L+P+++F R +P IA + L Sbjct: 62 ----QSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTL 117 Query: 128 TVVWFGIGEGSKFFLIFISCFLSVVVSAAAAAVGVNKNRLRAAQTLGANRYQLFTRVVLP 187 V+W G GE SK LIF + V ++ A VN RLRAA +LGA ++++ + V+LP Sbjct: 118 AVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILP 177 Query: 188 NALPEIFTGVRLSIGIGWTSLIAAEMVAANSGLGWMVINAGTYLRTDVVMLGILLLGIIG 247 + +P + TG R+++G + ++++AE+V+A GLG ++ A + RT+ V +GI+ LGI+G Sbjct: 178 STVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILG 237 Query: 248 YLFDLALVLLQR 259 YLFD L + R Sbjct: 238 YLFDRVLRVATR 249 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 140 bits (352), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 4/232 (1%) Query: 33 WQLSGSLHWIDPLLLPPPSEIFQTTGDILADGYRQVSLWQHILVSVLRATVAFVAAIAAG 92 W+++ W+ +LP P + + ++ A G LW+H+ VS RA F G Sbjct: 47 WEVAAQAGWLSSRILPEPLAVLKAAWELSASG----ELWRHLAVSSGRAASGFAVGAGLG 102 Query: 93 IPLGLAMGLSQPVSAVLEPFVQFLRPLPKIALIPLTVVWFGIGEGSKFFLIFISCFLSVV 152 + LGL G + +L+ +Q +R +P +ALIPL ++WFGI E +K FL+ + F V Sbjct: 103 LILGLLSGSLRSAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVY 162 Query: 153 VSAAAAAVGVNKNRLRAAQTLGANRYQLFTRVVLPNALPEIFTGVRLSIGIGWTSLIAAE 212 ++ V++ + A++ G + + L+ V+LP ALP I G+R ++G+ W LI AE Sbjct: 163 LNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAE 222 Query: 213 MVAANSGLGWMVINAGTYLRTDVVMLGILLLGIIGYLFDLALVLLQRAFVPW 264 ++A +G+G+M +NA +L+TDVV++GILL ++G L D A L+R ++ W Sbjct: 223 TISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARWLERFWLRW 274 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 135/251 (53%), Gaps = 15/251 (5%) Query: 28 LVLGVWQLSGSLHWIDPLLLPPPSEIFQT--------------TGDILADGYRQVSLWQH 73 +V+ +W+ + WI+P +LP P + + G LA + L Sbjct: 18 IVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFSG-ELVMD 76 Query: 74 ILVSVLRATVAFVAAIAAGIPLGLAMGLSQPVSAVLEPFVQFLRPLPKIALIPLTVVWFG 133 + S+ R F+ +PLGL MG SQ + ++ VQ +RP+P IA IPL ++WFG Sbjct: 77 AIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFG 136 Query: 134 IGEGSKFFLIFISCFLSVVVSAAAAAVGVNKNRLRAAQTLGANRYQLFTRVVLPNALPEI 193 +G FLI + F V+++ A V+ LRAA+ LGA++ LF RV+LP A+P I Sbjct: 137 LGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYI 196 Query: 194 FTGVRLSIGIGWTSLIAAEMVAANSGLGWMVINAGTYLRTDVVMLGILLLGIIGYLFDLA 253 +GVR+ IG + +I AEM+A ++GLG+ ++ A Y +D ++ G++ +G++G DL Sbjct: 197 LSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLG 256 Query: 254 LVLLQRAFVPW 264 + L + W Sbjct: 257 MSRLNNYMLRW 267 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 115 bits (287), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 39 LHWIDPLLLPPPSEIFQTTGDILADGYRQVSLWQHILVSVLRATVAFVAAIAAGIPLGLA 98 L I LLPPPSE+ T + G L HI S+ R FV A + LGL Sbjct: 45 LELIPARLLPPPSELAHTLWSLAQRG----ELLPHIAASLARVAAGFVIGSALAVALGLL 100 Query: 99 MGLSQPVSAVLEPFVQFLRPLPKIALIPLTVVWFGIGEGSKFFLIFISCFLSVVVSAAAA 158 +G+S+ A+LEP Q LR +P +A IPL ++W GI E K LI I F V ++ A Sbjct: 101 VGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAG 160 Query: 159 AVGVNKNRLRAAQTLGANRYQLFTRVVLPNALPEIFTGVRLSIGIGWTSLIAAEMVAANS 218 ++ + T G N L ++LP +LP +F G+R + + W L+AAE++AA Sbjct: 161 IRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATK 220 Query: 219 GLGWMVINAGTYLRTDVVMLGILLLGIIGYLFDLALVLLQRAFVPW 264 G+G+++ + R D+V+ IL+L ++G L D L +++ + W Sbjct: 221 GVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRAVEQKSLGW 266 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 655,080 Number of extensions: 21239 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 17 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)